FC920925

Overview
NameFC920925
Unique NameFC920925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP7 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 53/161 (32.92%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            N+++E AR  +P   + +  GG+  E TL+ NV     +  R R+L D+S++D    +   K++ P ++AP     +    GEV  A+AA +      LS  S   IEEV A+     ++QLYV K R     +++RA+  G   LV T D P  G R  D
Sbjct:    7 NDYREAARRRVPPFMFHYADGGSFSERTLERNVTDLADLALRQRVLKDMSQLDTEIELFGEKLAMPAVLAPVGACGMYARRGEVQAAQAAENKGIPFTLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_ACTP2 (L-lactate dehydrogenase [cytochrome] OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=lldD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 53/161 (32.92%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            N+++E AR  +P   + +  GG+  E TL+ NV     +  R R+L D+S++D    +   K++ P ++AP     +    GEV  A+AA +      LS  S   IEEV A+     ++QLYV K R     +++RA+  G   LV T D P  G R  D
Sbjct:    7 NDYREAARRRVPPFMFHYADGGSFSERTLERNVTDLADLALRQRVLKDMSQLDTEIELFGEKLAMPAVLAPVGACGMYARRGEVQAAQAAENKGIPFTLSTVSICPIEEVTAAIKRPMWFQLYVLKDRGFMKHVLERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SALCH (L-lactate dehydrogenase [cytochrome] OS=Salmonella choleraesuis GN=lldD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 52/161 (32.30%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +  P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLPMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SALNS (L-lactate dehydrogenase [cytochrome] OS=Salmonella newport (strain SL254) GN=lldD PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.074e-18
Identity = 52/161 (32.30%), Postives = 81/161 (50.31%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L T + +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETPLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_BARQU (L-lactate dehydrogenase [cytochrome] OS=Bartonella quintana GN=lldD PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.576e-17
Identity = 51/160 (31.87%), Postives = 80/160 (50.00%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++ A+  LP   + +  GGA  E T++ N      +  R RIL  V  +DLS  + D +++ PI++AP     +    GEV  ARAA +      LS  S  ++ EV A   +  ++QLYV K R     +++R+   G + LV T D P  G R  D
Sbjct:    8 DYRKAAKRRLPPFLFHYIDGGAYAEETMRRNYADLQALALRQRILRQVGEVDLSIKLFDQRLNLPIVLAPVGLTGMYARRGEVKAARAAVAKGIPFTLSSVSVCSLAEVHAEVGSGFWFQLYVLKDRGFMRDVLERSWLAGVRTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LA2M_MYCSM (Lactate 2-monooxygenase OS=Mycobacterium smegmatis PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 5.989e-17
Identity = 53/169 (31.36%), Postives = 91/169 (53.85%), Query Frame = 1
Query:  178 PVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLA--NPEGEVATARAAASCNTIMVLSFTSSSTIEEVAA-SSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADI 675
            P++  +++  A+ ALP     + AGG+ DEHT + NVEAF      PR+L+  +  DLS  +     +AP+  AP     L   +  G+ A+A+A+A      + S  + S++E++   + +   ++QLY  + RD+  + ++RAE  G+  LV+T DT   G R  D+
Sbjct:   24 PMSYADWEAHAQQALPPGVLSYVAGGSGDEHTQRANVEAFKHWGLMPRMLMAATERDLSVELWGKTWAAPMFFAPIGVIALCAQDGHGDAASAQASARTGVPYITSTLAVSSLEDIRKHAGDTPAYFQLYYPEDRDLAESFIRRAEEAGYDGLVITLDTWIFGWRPRDL 192          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: YKN3_SCHPO (Uncharacterized lactate 2-monooxygenase PB1A11.03 OS=Schizosaccharomyces pombe GN=SPAPB1A11.03 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 57/178 (32.02%), Postives = 93/178 (52.25%), Query Frame = 1
Query:  157 RFHMAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEV-AASSNAVRFYQLY--VFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKN 681
            +F      V+   +++LA   + K    +  G A    T  +N+E+F + +  P  L+     DLSTT+   K   PI +AP    K+ NPEGE  +  AA   +   ++S  S+++ E++  AS    R+YQLY      +DIT +L+ RA++ G + L++T DT  LG R +D+ N
Sbjct:   26 KFQRPQITVDGRHWEQLAVERMTKDAAGYVYGCAGKRETYDKNMESFKKWSIIPNRLIKSGFPDLSTTVFGQKYPFPIALAPVGVQKIFNPEGESGSCAAATREHIPYIISTASATSFEDIEKASGPGERWYQLYWPSNDHQDITISLLNRAKKTGCRVLIVTLDTFILGWRPSDMDN 203          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_BART1 (L-lactate dehydrogenase [cytochrome] OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=lldD PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 51/160 (31.87%), Postives = 76/160 (47.50%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++ A+  LP   + +  GGA  E TL+ N      +  R RIL  V  +DLS  + + ++  PI++AP     +    GEV  A AA +      LS  S   I EV  +     ++QLYV K R      ++RA  +G + LV T D P  G R  D
Sbjct:    8 DYRKAAKRRLPPFLFHYIDGGAYAEETLRRNCSDLQALALRQRILRQVGGVDLSIKLFEQRLDLPIVLAPVGLTGMYARRGEVQAAHAATAKGIPFTLSSVSVCPIAEVQEAVGGGFWFQLYVLKDRGFMRDALERAWASGVRTLVFTVDMPIPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_YERPY (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lldD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 52/160 (32.50%), Postives = 75/160 (46.88%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA +E TL+ N      I  R R+L ++S + L T +     + P+++ P     +    GEV  ARAA        LS  S   IEEVA +     ++QLYV K R      + RA+  G K LV T D P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_YERPS (L-lactate dehydrogenase [cytochrome] OS=Yersinia pseudotuberculosis GN=lldD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 52/160 (32.50%), Postives = 75/160 (46.88%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA +E TL+ N      I  R R+L ++S + L T +     + P+++ P     +    GEV  ARAA        LS  S   IEEVA +     ++QLYV K R      + RA+  G K LV T D P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYNEQTLRRNTADLADIALRQRVLKNMSELSLETQLFGETQAMPVVLGPVGLSGMYARRGEVQAARAADKKGIPFTLSTLSVCPIEEVAPAIARPMWFQLYVLKDRGFMRNALTRAQAAGVKTLVFTVDMPVPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC920925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_ACTP73.176e-1832.92L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_ACTP23.176e-1832.92L-lactate dehydrogenase [cytochrome] OS=Actinobaci... [more]
LLDD_SALCH5.417e-1832.30L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALNS7.074e-1832.30L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_BARQU1.576e-1731.88L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LA2M_MYCSM5.989e-1731.36Lactate 2-monooxygenase OS=Mycobacterium smegmatis... [more]
YKN3_SCHPO1.334e-1632.02Uncharacterized lactate 2-monooxygenase PB1A11.03 ... [more]
LLDD_BART11.334e-1631.88L-lactate dehydrogenase [cytochrome] OS=Bartonella... [more]
LLDD_YERPY2.276e-1632.50L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]
LLDD_YERPS2.276e-1632.50L-lactate dehydrogenase [cytochrome] OS=Yersinia p... [more]

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Properties
Property NameValue
Genbank descriptionC32014H05EF RVDevelop1 Citrus clementina cDNA clone C32014H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920925 ID=FC920925; Name=FC920925; organism=Citrus clementina; type=EST; length=698bp
ACTAATCCTTTATACGCTTCTTGACTTTAACTCTGCCCCCGACTCACTGT
TGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATTTTTAGTCATTC
GGGTTCATTTCTTTACAAAATTCTATTGTTTAAGTTTGATTAATAGTTAT
TCGAATCGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAGTTCCA
AGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTG
GTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCAT
AGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATAGATTT
ATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTC
CAACGGCTTTCCATAAGCTTGCAAACCCTGAAGGAGAAGTAGCCACAGCC
AGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACATCTAG
CAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTTCTATC
AATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCAGAGA
GCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAG
ACTTGGTAGAAGGGAGGCAGATATAAAGAACAAATGATTACACGCCGT
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