FC920925

Overview
NameFC920925
Unique NameFC920925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_PSEP1 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=lldD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 58/160 (36.25%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + L T + D  +S P+ +AP     +    GEV  ARAAA+      +S  S   IEEVA + N   ++QLYV K R      ++RA+  G K LV T D P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLAGIALRQRVLNNMSELSLETKLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAINRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCR (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus GN=lldD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 58/160 (36.25%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +F+E AR  LP+  +D+  GGA  E T+  N++    I  R R+L+DVS +D STT+   + + P+ +AP     +    GE   ARAAA+      LS  S   ++EV A+S    ++QLYV + R     L+ RA   G   LV T D P  G R  D
Sbjct:    8 DFREAARRRLPRFLFDYIDGGAYAERTMARNIDDLADIALRQRVLMDVSVVDPSTTLFGVRQALPVALAPVGLTGMYARRGECQAARAAAAKGVPFCLSTVSVCDVDEVRAASATPFWFQLYVLRDRGFMRDLLARASAAGATTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_CAUCN (L-lactate dehydrogenase [cytochrome] OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=lldD PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.928e-21
Identity = 58/160 (36.25%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +F+E AR  LP+  +D+  GGA  E T+  N++    I  R R+L+DVS +D STT+   + + P+ +AP     +    GE   ARAAA+      LS  S   ++EV A+S    ++QLYV + R     L+ RA   G   LV T D P  G R  D
Sbjct:    8 DFREAARRRLPRFLFDYIDGGAYAERTMARNIDDLADIALRQRVLMDVSVVDPSTTLFGVRQALPVALAPVGLTGMYARRGECQAARAAAAKGVPFCLSTVSVCDVDEVRAASATPFWFQLYVLRDRGFMRDLLARASAAGATTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_ERWCT (L-lactate dehydrogenase [cytochrome] OS=Erwinia carotovora subsp. atroseptica GN=lldD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.989e-20
Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  EHTL+ N      I  R RIL ++S + L T +   K++ P+++AP     +    GEV  ARAAA       LS  S   IEEVA + +   ++QLYV K R    + ++RA+  G K LV T D P  G R  D
Sbjct:    8 DYRAAAQRRLPPFLFHYIDGGAYGEHTLRRNTADLADIALRQRILKNMSDLSLETQLFGEKLAMPVVLAPVGLTGMYARRGEVQAARAAAQKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRSALERAQAAGVKTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_XANP2 (L-lactate dehydrogenase [cytochrome] OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 58/161 (36.02%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++E AR  LP   + +  GGA  E TL+ NVE    +  R R+L  V  +DLSTT+L  ++S P+ +AP     +    GEV  A+AA        LS  S  +IEEV +      ++QLYV K R      ++RA   G + LV T D P  G R  D
Sbjct:    7 SDYREAARRRLPPFLFHYIDGGAYAEATLRRNVEDLSDLALRQRVLKSVGEVDLSTTLLKQQLSMPVGLAPVGLTGMYARRGEVQAAQAATQKGIPFTLSTVSVCSIEEVQSQVGKPIWFQLYVLKDRGFMKNALERAWAAGIRTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_PSEPW (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas putida (strain W619) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + L T + D  +S P+ +AP     +    GEV  ARAAA+      +S  S   IEEVA + +   ++QLYV K R      ++RA+  G K LV T D P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLAGIALRQRVLKNMSELSLETRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD1_MYCTU (Putative L-lactate dehydrogenase [cytochrome] 1 OS=Mycobacterium tuberculosis GN=lldD1 PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 60/148 (40.54%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  199 QELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTAD 642
            Q+ A+  LPK  Y      +E   T+ +NV AF  + F P ++    + DLSTT++  ++S P+II+PT   +  +P GEVA ARAAA+  T+M LS  +S  IEEV A +N   F+Q+Y    RD  A  V+RA + G   LV+T D
Sbjct:   13 QQRAKRRLPKSVYSSLIAASEKGITVADNVAAFSELGFAPHVIGATDKRDLSTTVMGQEVSLPVIISPTGV-QAVDPGGEVAVARAAAARGTVMGLSSFASKPIEEVIA-ANPKTFFQVYWQGGRDALAERVERARQAGAVGLVVTTD 158          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_PSEE4 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas entomophila (strain L48) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.393e-20
Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  EHTL+ NV     I  R R+L ++S + L T + D  +S P+ +AP     +    GEV  ARAAA+      +S  S   IEEVA + +   ++QLYV K R      ++RA+  G K LV T D P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYADGGAYAEHTLRHNVSDLASIALRQRVLKNMSDLSLETRLFDETLSMPVALAPVGLTGMYARRGEVQAARAAAAHGIPFTMSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SERP5 (L-lactate dehydrogenase [cytochrome] OS=Serratia proteamaculans (strain 568) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  EHTL+ N E    I  R RIL ++S + L T++   K++ P+I+ P     +    GEV  A+AAA       LS  S   IEEVA + +   ++QLYV K R      ++RA+  G K LV T D P  G R  D
Sbjct:    8 DYRAAAQAKLPPFLFHYIDGGAYAEHTLRRNTEDLAGIALRQRILRNMSDLSLETSLFGEKLAMPVILGPVGLTGMYARRGEVQAAKAAAQKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_PSEMY (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas mendocina (strain ymp) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 58/160 (36.25%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A   LP   + +  GGA  EHTL+ NV     I  R R+L ++S +DLST +   K+S P+ +AP     +    GEV  A+AAA+      LS  S   IEEVA + +   ++QLYV K R      ++RA+  G   LV T D P  G R  D
Sbjct:    8 DYRAAAERKLPPFLFHYADGGAYAEHTLRRNVADLSNIELRQRVLKNMSELDLSTELFGEKMSMPVGLAPVGLTGMYARRGEVQAAKAAAAKGIPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC920925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_PSEP18.928e-2136.25L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_CAUCR8.928e-2136.25L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_CAUCN8.928e-2136.25L-lactate dehydrogenase [cytochrome] OS=Caulobacte... [more]
LLDD_ERWCT1.989e-2035.63L-lactate dehydrogenase [cytochrome] OS=Erwinia ca... [more]
LLDD_XANP22.598e-2036.02L-lactate dehydrogenase [cytochrome] OS=Xanthobact... [more]
LLDD_PSEPW2.598e-2035.63L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD1_MYCTU2.598e-2040.54Putative L-lactate dehydrogenase [cytochrome] 1 OS... [more]
LLDD_PSEE43.393e-2035.63L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_SERP54.431e-2035.63L-lactate dehydrogenase [cytochrome] OS=Serratia p... [more]
LLDD_PSEMY4.431e-2036.25L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionC32014H05EF RVDevelop1 Citrus clementina cDNA clone C32014H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920925 ID=FC920925; Name=FC920925; organism=Citrus clementina; type=EST; length=698bp
ACTAATCCTTTATACGCTTCTTGACTTTAACTCTGCCCCCGACTCACTGT
TGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATTTTTAGTCATTC
GGGTTCATTTCTTTACAAAATTCTATTGTTTAAGTTTGATTAATAGTTAT
TCGAATCGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAGTTCCA
AGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTG
GTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCAT
AGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATAGATTT
ATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTC
CAACGGCTTTCCATAAGCTTGCAAACCCTGAAGGAGAAGTAGCCACAGCC
AGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACATCTAG
CAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTTCTATC
AATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCAGAGA
GCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAG
ACTTGGTAGAAGGGAGGCAGATATAAAGAACAAATGATTACACGCCGT
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