FC920925

Overview
NameFC920925
Unique NameFC920925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_CHRSD (L-lactate dehydrogenase [cytochrome] OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=lldD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.431e-20
Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  EHTL+ NVE    I  R R+L D+S + L T +    ++ P+ +AP     +    GEV  ARAAAS      LS  S   I EVA++     ++QLYV + R     +++RA+  G K LV T D P  G R  D
Sbjct:    8 DYRHAAKRRLPPFLFHYADGGAYAEHTLRRNVEDLAGIALRQRVLKDMSHLSLETELFGEPLAMPVALAPVGLAGMYARRGEVQAARAAASKGIPFTLSTVSVCPIAEVASAIERPLWFQLYVLRDRGFMKHVLERAKAAGVKTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAE (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa GN=lldD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA + +   ++QLYV K R      ++RA+  G   LV T D P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_PSEAB (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA + +   ++QLYV K R      ++RA+  G   LV T D P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA8 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain LESB58) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA + +   ++QLYV K R      ++RA+  G   LV T D P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_PSEA7 (L-lactate dehydrogenase [cytochrome] OS=Pseudomonas aeruginosa (strain PA7) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  193 EFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            +++  A+  LP   + +  GGA  E+TL+ NVE    I  R R+L ++S + L T + D  ++ P+ +AP     +    GEV  ARAAA+      LS  S   IEEVA + +   ++QLYV K R      ++RA+  G   LV T D P  G R  D
Sbjct:    8 DYRAAAQRKLPPFLFHYIDGGAYAEYTLRRNVEDLSAIALRQRVLKNMSELSLETRLFDETLAMPVALAPVGLTGMYARRGEVQAARAAAAKGVPFTLSTVSVCPIEEVAPAIDRPMWFQLYVLKDRGFMRNALERAKAAGVTTLVFTVDMPVPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_ENTS8 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.558e-20
Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TLK NVE   ++  R R+L ++S + L TT+ +  +S P+ + P     +    GEV  ARAA++      LS  S   IEEVA   N   ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYAEYTLKRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALGPVGLCGMYARRGEVQAARAASAKGIPFTLSTVSVCPIEEVAPVMNRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SHISS (L-lactate dehydrogenase [cytochrome] OS=Shigella sonnei (strain Ss046) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SHIFL (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri GN=lldD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SHIF8 (L-lactate dehydrogenase [cytochrome] OS=Shigella flexneri serotype 5b (strain 8401) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SHIDS (L-lactate dehydrogenase [cytochrome] OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lldD PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 55/161 (34.16%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE    +  R RIL ++S + L TT+ + K+S P+ +AP     +    GEV  A+AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSEVALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC920925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_CHRSD4.431e-2035.63L-lactate dehydrogenase [cytochrome] OS=Chromohalo... [more]
LLDD_PSEAE7.558e-2035.00L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEAB7.558e-2035.00L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA87.558e-2035.00L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_PSEA77.558e-2035.00L-lactate dehydrogenase [cytochrome] OS=Pseudomona... [more]
LLDD_ENTS87.558e-2034.16L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]
LLDD_SHISS9.871e-2034.16L-lactate dehydrogenase [cytochrome] OS=Shigella s... [more]
LLDD_SHIFL9.871e-2034.16L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIF89.871e-2034.16L-lactate dehydrogenase [cytochrome] OS=Shigella f... [more]
LLDD_SHIDS9.871e-2034.16L-lactate dehydrogenase [cytochrome] OS=Shigella d... [more]

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Properties
Property NameValue
Genbank descriptionC32014H05EF RVDevelop1 Citrus clementina cDNA clone C32014H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920925 ID=FC920925; Name=FC920925; organism=Citrus clementina; type=EST; length=698bp
ACTAATCCTTTATACGCTTCTTGACTTTAACTCTGCCCCCGACTCACTGT
TGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATTTTTAGTCATTC
GGGTTCATTTCTTTACAAAATTCTATTGTTTAAGTTTGATTAATAGTTAT
TCGAATCGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAGTTCCA
AGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTG
GTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCAT
AGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATAGATTT
ATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTC
CAACGGCTTTCCATAAGCTTGCAAACCCTGAAGGAGAAGTAGCCACAGCC
AGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACATCTAG
CAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTTCTATC
AATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCAGAGA
GCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAG
ACTTGGTAGAAGGGAGGCAGATATAAAGAACAAATGATTACACGCCGT
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