FC920925

Overview
NameFC920925
Unique NameFC920925
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14215 contig Ccv1_Contig14215:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SALPB (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SALPA (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A GN=lldD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SALHS (L-lactate dehydrogenase [cytochrome] OS=Salmonella heidelberg (strain SL476) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIQRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SALG2 (L-lactate dehydrogenase [cytochrome] OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SALEP (L-lactate dehydrogenase [cytochrome] OS=Salmonella enteritidis PT4 (strain P125109) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SALDC (L-lactate dehydrogenase [cytochrome] OS=Salmonella dublin (strain CT_02021853) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SALAR (L-lactate dehydrogenase [cytochrome] OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTLKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_SALA4 (L-lactate dehydrogenase [cytochrome] OS=Salmonella agona (strain SL483) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 53/161 (32.92%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  E+TL+ NVE   ++  R R+L ++S + L TT+ +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQVALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_HAEDU (L-lactate dehydrogenase [cytochrome] OS=Haemophilus ducreyi GN=lldD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 53/162 (32.72%), Postives = 82/162 (50.62%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADI 675
            N+++E AR  +P   + +  GG+  E TL  NV     +  R R+L D+S+++    +   K++ PI++AP     +    GEV  A+AA +      LS  S   IEEV  +     +YQLYV K R    ++++RA+  G   LV T D P  G R  D+
Sbjct:    7 NDYREAARRRVPPFMFHYADGGSFSERTLARNVSDLADLALRQRVLKDMSQLNTEIELFGEKLAMPIVLAPVGALGMYARRGEVQAAQAAENKGLPFTLSTVSVCPIEEVTPAIKRPMWYQLYVLKDRGFMKSVLERAKAAGCSTLVFTVDMPTPGARYRDL 168          
BLAST of FC920925 vs. ExPASy Swiss-Prot
Match: LLDD_ENT38 (L-lactate dehydrogenase [cytochrome] OS=Enterobacter sp. (strain 638) GN=lldD PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.425e-18
Identity = 53/161 (32.92%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  190 NEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRPRILVDVSRIDLSTTILDYKISAPIIIAPTAFHKLANPEGEVATARAAASCNTIMVLSFTSSSTIEEVAASSNAVRFYQLYVFKKRDITATLVQRAERNGFKALVLTADTPRLGRREAD 672
            ++++  A+  LP   + +  GGA  EHTL+ NVE    +  R R+L ++S + L T + +  +S P+ +AP     +    GEV  A AA +      LS  S   IEEVA +     ++QLYV + R      ++RA+  G   LV T D P  G R  D
Sbjct:    7 SDYRAAAQRILPPFLFHYIDGGAYSEHTLRRNVEDLSEVALRQRVLKNMSDLSLETKLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADARGIPFTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPTPGARYRD 167          
The following BLAST results are available for this feature:
BLAST of FC920925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_SALPB1.425e-1832.92L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPA1.425e-1832.92L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALHS1.425e-1832.92L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALG21.425e-1832.92L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALEP1.425e-1832.92L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALDC1.425e-1832.92L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALAR1.425e-1832.92L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALA41.425e-1832.92L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_HAEDU1.425e-1832.72L-lactate dehydrogenase [cytochrome] OS=Haemophilu... [more]
LLDD_ENT381.425e-1832.92L-lactate dehydrogenase [cytochrome] OS=Enterobact... [more]

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Properties
Property NameValue
Genbank descriptionC32014H05EF RVDevelop1 Citrus clementina cDNA clone C32014H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920925 ID=FC920925; Name=FC920925; organism=Citrus clementina; type=EST; length=698bp
ACTAATCCTTTATACGCTTCTTGACTTTAACTCTGCCCCCGACTCACTGT
TGTAATCTGCTTCACGATCGACCTTCATCAGTTGAAATTTTTAGTCATTC
GGGTTCATTTCTTTACAAAATTCTATTGTTTAAGTTTGATTAATAGTTAT
TCGAATCGGTTTCACATGGCAGCTGAACCTGTTAATTTGAATGAGTTCCA
AGAATTGGCAAGGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTG
GTGGAGCAGAAGATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCAT
AGAATTACGTTTCGGCCAAGAATTCTTGTCGATGTCAGCAGAATAGATTT
ATCGACTACTATACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTC
CAACGGCTTTCCATAAGCTTGCAAACCCTGAAGGAGAAGTAGCCACAGCC
AGAGCAGCAGCTTCATGTAACACCATAATGGTTTTATCCTTCACATCTAG
CAGCACCATAGAGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTTCTATC
AATTATATGTATTCAAGAAACGAGATATAACAGCTACTCTAGTGCAGAGA
GCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTGCTGATACTCCAAG
ACTTGGTAGAAGGGAGGCAGATATAAAGAACAAATGATTACACGCCGT
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