FC930295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.898e-23 Identity = 71/210 (33.81%), Postives = 101/210 (48.10%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705 R F S VGVF++ T+ L+ + AEL IP V T+IGG+ +G L GN+NG+L+ T +E + + + V V + R++A GN I ND+ A H DL E E I L V V R +A VG+ +NRG L HP +L+ + L V GTVN G+ ++G+G+ G DT P Sbjct: 3 RASFAGSPYVGVFARATDDVLLLRSDVDDDTADAMAAELD--IPAVATTIGGSGTVGALATGNENGILVTSNVTMREKEAIETTA--SVSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESIESALNVPVARGKLADVRTVGTAAVATNRGVLCHPKAREPELEAIEDHLDVRADIGTVNYGAPLVGSGIVAGQTGYVVGEDTTGP 208
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_SULIM (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eif6 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22 Identity = 73/216 (33.80%), Postives = 113/216 (52.31%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQPNSL 714 RL + +GV+ N + +V G S + + ++ +++ I + ++G GN NG+LLP +T D E + L+ +L D V+ + +++ALGN I N+ AL + + + E+II + LGVE R+ +A I VGS +N+GGLVH TS ++L EL L V + GTVN GS I +GL ND G+ T P L Sbjct: 5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEIL 215
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_SULIK (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eif6 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22 Identity = 73/216 (33.80%), Postives = 113/216 (52.31%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQPNSL 714 RL + +GV+ N + +V G S + + ++ +++ I + ++G GN NG+LLP +T D E + L+ +L D V+ + +++ALGN I N+ AL + + + E+II + LGVE R+ +A I VGS +N+GGLVH TS ++L EL L V + GTVN GS I +GL ND G+ T P L Sbjct: 5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEIL 215
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_SULIA (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.27) GN=eif6 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.293e-22 Identity = 73/216 (33.80%), Postives = 113/216 (52.31%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVI--PVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQPNSL 714 RL + +GV+ N + +V G S + + ++ +++ I + ++G GN NG+LLP +T D E + L+ +L D V+ + +++ALGN I N+ AL + + + E+II + LGVE R+ +A I VGS +N+GGLVH TS ++L EL L V + GTVN GS I +GL ND G+ T P L Sbjct: 5 RLSIFGTDNIGVYIYTNNKYTVVPRG----LDSETKENIVQILGTELIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEIL 215
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METPE (Translation initiation factor 6 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=eif6 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.379e-22 Identity = 65/210 (30.95%), Postives = 104/210 (49.52%), Query Frame = 1 Query: 67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 696 M L +E +G+F+++ +V S + + + L + +VKT + G+ IIG L GN G ++ E++ ++ + V +E ++A GN I ND +A H D+D T E I VLGV V R T++G VG +NRG LVH ++ +L L + +P+ GT+N GS ++G GL N G +T Sbjct: 1 MIRTLAYEGDPHIGIFTRVLEDIAVVPPEASADYCAALKEALG--VTLVKTHVQGSSIIGSLVSGNSRGAIVSGLAYPDEIR----AIEEYREVMLLEGSMNAAGNVILANDQMAAVHPDMDNATIEQIHSVLGVPVIRLTLSGIKTVGMAGYATNRGILVHARSAGRELATLESTTDLPVGTGTINMGSGLVGTGLLANSTGYLAGIET 204
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METAC (Translation initiation factor 6 OS=Methanosarcina acetivorans GN=eif6 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.094e-21 Identity = 68/201 (33.83%), Postives = 105/201 (52.24%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705 +GVF+ T LV + E E+ DV V++T + G+ ++G L GN NG +LP+ E+Q + + V + +RL+A+GN + ND AL H DL + E IA L V+V+R T+AG VG +N+G LVHP + + + L + P+ GT N G++++G+GL N GS+T P Sbjct: 13 IGVFATCTEDVVLVPPLTKPEVCALLE-EVLDV-RVIETLVNGSIVVGALSRGNSNGFMLPYGAR-AEMQRFTD-----IPVGILPDRLNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEREVLEKIFGFPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGP 205
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21 Identity = 67/203 (33.00%), Postives = 102/203 (50.25%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705 +GV+ + + L+ +G F T +LA + V + TSI R+IG LC+ N G+LLP T E L+ L +V V ++ +L+ALGN I ND A+ L +E + I+DVLGVE ++ +AG G +N G +HP ED+ S LL V + ++N G + +G+ N+ GS T P Sbjct: 14 IGVYISVNDNTILLPMG----FAKTKAEKLAKYLGVNYLFTSIANTRLIGALCIMNNKGILLPKTAYQNEFDFLKKELDLEVGV--LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAGFNQTGVVMVANNSGAAIHPEADEEDMKTFSNLLGVKIEQSSINNGIPYVSSGILANNNCIIVGSLTTGP 210
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21 Identity = 74/222 (33.33%), Postives = 116/222 (52.25%), Query Frame = 1 Query: 67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCGSDTRQPNSL 714 M R F +GV + T L+ I + + E+++V+ ++T+IGG+ ++G L V NK GLLLP D+EL ++N L + + V+ I+ + +ALGN I ND AL +L ++ ++ I D L VEV T+A VGS +N+G L HP ++L+ L +L +V + GT N+G+ +GA + N A G DT P L Sbjct: 3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVN----EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELL 219
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_THEAC (Translation initiation factor 6 OS=Thermoplasma acidophilum GN=eif6 PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.064e-20 Identity = 59/198 (29.80%), Postives = 103/198 (52.02%), Query Frame = 1 Query: 103 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDT 696 +G+++K + + + E + F+ L + V + SI + +IG + V N NGL++P+ + L L D V +++++++A+GN I NDH A+ H + + + I D LGVE R T+ + VGS +++G LV+P T ++L+ L +V + +GT N GS +GA + N G DT Sbjct: 13 IGIYAKAWDDVAFITMMADEKTVADFQEVLQ--VDVRRISIDNSSLIGTMMVMNSNGLIVPYGSEITGLGDL-----DGRNVLQLKDKINAIGNDIIANDHGAIIHKNFSNRSRKEIEDTLGVETIRTTIGNILTVGSAGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGTANFGSIYVGASIVANSKGVLVGKDT 203
BLAST of FC930295 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.696e-20 Identity = 62/210 (29.52%), Postives = 100/210 (47.62%), Query Frame = 1 Query: 76 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTRQP 705 R F S +GVF++ T + LV + F + EL +P V+T++GG+ +G L GN +GLL+ + ++E + + V V + ++A GN + ND A H+ L + + + L V R +AG VG+ + G L HP + +L+ + L V GTVN G+ ++G+GL D G DT P Sbjct: 3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLVSNRIRERERDRIEAA---GVTVGELPGAVNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGTAAVATTDGVLCHPKATDAELERIEETLGVYADVGTVNYGAPLVGSGLVAADDGYLVGDDTTGP 207 The following BLAST results are available for this feature:
BLAST of FC930295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930295 ID=FC930295; Name=FC930295; organism=Citrus clementina; type=EST; length=714bpback to top |