BQ622912

Overview
NameBQ622912
Unique NameBQ622912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9861 contig Csv1_Contig9861:859..1322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 4.634e-85
Identity = 151/154 (98.05%), Postives = 152/154 (98.70%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRGSQ YR LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGSQMYRPLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB1_LUPAL (Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 4.634e-85
Identity = 151/154 (98.05%), Postives = 152/154 (98.70%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKS+VCDIPP GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 312.383 bits (799), Expect = 6.053e-85
Identity = 151/154 (98.05%), Postives = 152/154 (98.70%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPIGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 6.053e-85
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPHGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 6.053e-85
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 7.905e-85
Identity = 149/154 (96.75%), Postives = 153/154 (99.35%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLSM+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB2_ORYSJ (Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 7.905e-85
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 1.348e-84
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTA AMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GL MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES+MN
Sbjct:  263 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTACAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 1.761e-84
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRG+MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLSMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMN 416          
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 1.761e-84
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 2
Query:    2 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN 463
            LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLSM+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMN
Sbjct:  263 LHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMN 416          
The following BLAST results are available for this feature:
BLAST of BQ622912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB1_WHEAT4.634e-8598.05Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB1_LUPAL4.634e-8598.05Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=... [more]
TBB3_ORYSJ6.053e-8598.05Tubulin beta-3 chain OS=Oryza sativa subsp. japoni... [more]
TBB1_MAIZE6.053e-8597.40Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=... [more]
TBB1_ELEIN6.053e-8597.40Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P... [more]
TBB3_WHEAT7.905e-8596.75Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]
TBB2_ORYSJ7.905e-8597.40Tubulin beta-2 chain OS=Oryza sativa subsp. japoni... [more]
TBB5_GOSHI1.348e-8497.40Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB8_ORYSJ1.761e-8497.40Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_MAIZE1.761e-8497.40Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00003 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00003 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622912 ID=BQ622912; Name=BQ622912; organism=Citrus sinensis; type=EST; length=464bp
CCTGCACTTCTTCATGGTTGGGTTTGCTCCCCTTACCTCCCGTGGTTCTC
AGCAGTACCGTGCCTTGACAGTCCCAGAACTTACCCAACAAATGTGGGAT
GCCAAGAACATGATGTGTGCTGCCGACCCAAGGCATGGTCGTTACCTCAC
TGCTTCTGCCATGTTCAGGGGTAAAATGAGCACCAAGGAAGTTGACGAGC
AGATGATCAATGTTCAAAACAAAAACTCTTCCTACTTTGTGGAGTGGATT
CCAAACAATGTGAAGTCCAGTGTTTGTGACATTCCTCCCAGAGGTCTCTC
CATGGCATCCACCTTCATCGGGAACTCAACATCCATCCAAGAAATGTTCC
GAAGAGTGAGTGAGCAATTCACAGCTATGTTTAGGAGAAAGGCTTTCCTT
CACTGGTACACTGGTGAAGGGATGGATGAAATGGAGTTCACTGAAGCTGA
GAGCAATATGAATG
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