BQ622924

Overview
NameBQ622924
Unique NameBQ622924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622924_ssr546 microsatellite BQ622924_ssr546:546..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3539 contig Csv1_Contig3539:145..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STREM (30S ribosomal protein S9 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.304e-29
Identity = 71/124 (57.26%), Postives = 84/124 (67.74%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTEGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRE4 (30S ribosomal protein S9 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.304e-29
Identity = 71/124 (57.26%), Postives = 84/124 (67.74%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG +GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-VINQPFAVTSTEGSYDVFVNVVGGGYAGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_GEOSW (30S ribosomal protein S9 OS=Geobacillus sp. (strain WCH70) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.304e-29
Identity = 68/125 (54.40%), Postives = 87/125 (69.60%), Query Frame = 2 
Query:  107 FGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            +GTGRRK ++ARV L  G G+ +IN RD ++Y+    L ++ +K PLV      +YDV V   GGG SGQA AI  G+ARALL+V  D+R  LK+ GLLTRD+RV ERKK GL  AR+APQ+SKR
Sbjct:    7 YGTGRRKSSVARVRLVPGDGRIVINDRDIRDYIPSEAL-IEVVKQPLVLTETLGNYDVLVNVKGGGFSGQAGAIRHGIARALLQVDPDYRPVLKRAGLLTRDARVKERKKYGLKGARRAPQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_TROWT (30S ribosomal protein S9 OS=Tropheryma whipplei (strain Twist) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.234e-29
Identity = 73/125 (58.40%), Postives = 82/125 (65.60%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVS-QDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            G GRRK A ARV L  G G F++N RD  EY     L  Q+   PL  L    SYDV V  HGGG SGQA A+ LG+ARAL  +  +++R PLK  G LTRDSRV ERKKAGL KARKAPQYSKR
Sbjct:   31 GLGRRKSATARVYLSPGEGVFVVNGRDINEYFTSK-LHRQFACQPLKILDLLGSYDVKVTLHGGGASGQAGAVRLGIARALNTIDPENNRKPLKSAGFLTRDSRVKERKKAGLKKARKAPQYSKR 154
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_TROW8 (30S ribosomal protein S9 OS=Tropheryma whipplei (strain TW08/27) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.234e-29
Identity = 73/125 (58.40%), Postives = 82/125 (65.60%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVS-QDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            G GRRK A ARV L  G G F++N RD  EY     L  Q+   PL  L    SYDV V  HGGG SGQA A+ LG+ARAL  +  +++R PLK  G LTRDSRV ERKKAGL KARKAPQYSKR
Sbjct:   31 GLGRRKSATARVYLSPGEGVFVVNGRDINEYFTSK-LHRQFACQPLKILDLLGSYDVKVTLHGGGASGQAGAVRLGIARALNTIDPENNRKPLKSAGFLTRDSRVKERKKAGLKKARKAPQYSKR 154
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRPZ (30S ribosomal protein S9 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.234e-29
Identity = 71/124 (57.26%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-IINQPFAVTSTEGSYDVFVNVVGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRPM (30S ribosomal protein S9 OS=Streptococcus pyogenes serotype M28 GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.234e-29
Identity = 71/124 (57.26%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-IINQPFAVTSTEGSYDVFVNVVGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRPG (30S ribosomal protein S9 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.234e-29
Identity = 71/124 (57.26%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-IINQPFAVTSTEGSYDVFVNVVGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRPF (30S ribosomal protein S9 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.234e-29
Identity = 71/124 (57.26%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-IINQPFAVTSTEGSYDVFVNVVGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Match: RS9_STRPD (30S ribosomal protein S9 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.234e-29
Identity = 71/124 (57.26%), Postives = 83/124 (66.94%), Query Frame = 2 
Query:  110 GTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYIKVPLVTLGYETSYDVFVKAHGGGLSGQAQAITLGVARALLKVSQDHRSPLKKEGLLTRDSRVVERKKAGLHKARKAPQYSKR 481
            GTGRRK A+ARV L  GTGK  +N +D +EY+    L L  I  P      E SYDVFV   GGG  GQ+ AI  G+ARALL+V  D R  LK+ GLLTRD+R+VERKK GL KARKA Q+SKR
Sbjct:    8 GTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLRL-IINQPFAVTSTEGSYDVFVNVVGGGYGGQSGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
The following BLAST results are available for this feature:
BLAST of BQ622924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_STREM6.304e-2957.2630S ribosomal protein S9 OS=Streptococcus equi sub... [more]
RS9_STRE46.304e-2957.2630S ribosomal protein S9 OS=Streptococcus equi sub... [more]
RS9_GEOSW6.304e-2954.4030S ribosomal protein S9 OS=Geobacillus sp. (strai... [more]
RS9_TROWT8.234e-2958.4030S ribosomal protein S9 OS=Tropheryma whipplei (s... [more]
RS9_TROW88.234e-2958.4030S ribosomal protein S9 OS=Tropheryma whipplei (s... [more]
RS9_STRPZ8.234e-2957.2630S ribosomal protein S9 OS=Streptococcus pyogenes... [more]
RS9_STRPM8.234e-2957.2630S ribosomal protein S9 OS=Streptococcus pyogenes... [more]
RS9_STRPG8.234e-2957.2630S ribosomal protein S9 OS=Streptococcus pyogenes... [more]
RS9_STRPF8.234e-2957.2630S ribosomal protein S9 OS=Streptococcus pyogenes... [more]
RS9_STRPD8.234e-2957.2630S ribosomal protein S9 OS=Streptococcus pyogenes... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00015 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00015 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622924 ID=BQ622924; Name=BQ622924; organism=Citrus sinensis; type=EST; length=670bp
ACTGGTAGTATCGGCCACAGAAGCTGCGCCAGCTGAACTGGAAACAACTG
ACCTCAAGAAATACGTCAAGTCGAGGCTTCCCGGTGGCTTTGCGGCTCAA
ACTATTTTTGGAACGGGCCGTCGGAAATGCGCCATTGCTCGTGTCGTCCT
CCAAGAAGGCACCGGCAAATTCATCATCAACTACCGCGATGCCAAGGAAT
ATCTTCAAGGCAATCCACTATGGCTACAGTATATAAAAGTCCCTTTGGTA
ACTTTGGGTTATGAAACTAGCTATGATGTTTTTGTGAAAGCTCATGGTGG
CGGCCTCTCTGGTCAAGCTCAAGCAATAACACTCGGCGTTGCTCGTGCAT
TGTTGAAGGTGAGCCAGGACCATAGATCCCCTCTGAAAAAGGAAGGCCTT
CTGACTAGAGATTCCAGAGTAGTAGAGAGGAAAAAAGCTGGACTCCATAA
AGCCCGCAAAGCCCCACAGTATTCCAAACGTTGAGGCCAGAATTACAGTG
TGATGGACTGTTACCCGTAGATCTATTTTCTGCTTGTATCTCTGAATTAT
TATTATTATTATTATTTTTGGTTTAACATTTTATGTTTGGAGTTTTGTAC
TTCAGTTCCGGGTATCATGGAATCATAAACCATTTTTGATAAAAAAAACC
TAACAAAACAACTACAAAAA
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