BQ622929 | Citrus Genome Database

Overview


Name	BQ622929
Unique Name	BQ622929
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	486

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1721	contig	Csv1_Contig1721:317..801.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.844e-24
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GK+V G+VDQS+ SFLDDDQIG GFVLTC AYP S+VTIETHKEE L G
Sbjct:   42 GACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEEALVG 97

HSP 2 Score: 37.3502 bits (85), Expect = 5.844e-24
Identity = 17/20 (85.00%), Postives = 17/20 (85.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G DLPYSCRAGA
Sbjct:   24 ILDRAEEEGHDLPYSCRAGA 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.844e-24
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+ SG++DQS+QSFLDDDQI  G+VLTC AYPTSD TI+TH+EE L
Sbjct:   45 GACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGL 98

HSP 2 Score: 43.8986 bits (102), Expect = 5.844e-24
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLPYSCRAGA
Sbjct:   27 ILDAAEEAGLDLPYSCRAGA 46

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_DUNSA (Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.844e-24
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +GT+DQS+QSFLDDDQ G GFVLTC AY TSD TI TH+EE L
Sbjct:   41 GACSSCAGKVEAGTIDQSDQSFLDDDQQGRGFVLTCVAYATSDCTISTHQEESL 94

HSP 2 Score: 43.8986 bits (102), Expect = 5.844e-24
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLPYSCRAGA
Sbjct:   23 ILDAAEEAGLDLPYSCRAGA 42

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.595e-24
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GK+ +G+++Q +QSFLDDDQI EG+VLTCAAYP SDVTIETHKEEEL
Sbjct:   92 GSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145

HSP 2 Score: 40.0466 bits (92), Expect = 9.595e-24
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G+DLPYSCRAG+
Sbjct:   74 ILDAAEEEGIDLPYSCRAGS 93

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.901e-24
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV SG VDQS+QSFLDD Q+G+GFVLTC AYPTSDVTI TH+E  L
Sbjct:   40 GACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93

HSP 2 Score: 43.8986 bits (102), Expect = 9.901e-24
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLPYSCRAGA
Sbjct:   22 ILDAAEEAGLDLPYSCRAGA 41

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.289e-23
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ ++LDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   42 GSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97

HSP 2 Score: 36.1946 bits (82), Expect = 1.289e-23
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G DLPYSCRAG+
Sbjct:   24 ILDQAEEEGHDLPYSCRAGS 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.289e-23
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ ++LDDDQ+ +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   42 GSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97

HSP 2 Score: 36.1946 bits (82), Expect = 1.289e-23
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G DLPYSCRAG+
Sbjct:   24 ILDQAEEEGHDLPYSCRAGS 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.289e-23
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GK+ +G VDQS+ SFLDDDQ+ EGFVLTC AYP S+VTIETHKE++L G
Sbjct:   42 GACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKEDDLVG 97

HSP 2 Score: 37.7354 bits (86), Expect = 1.289e-23
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD+AEE G DLPYSCRAGA
Sbjct:   24 ILDSAEENGHDLPYSCRAGA 43

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.289e-23
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +G VDQS++SFLDDDQ+ EG+VLTC AYPTSD+TI+TH+EE L
Sbjct:   41 GACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94

HSP 2 Score: 41.5874 bits (96), Expect = 1.289e-23
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGL LPYSCRAGA
Sbjct:   23 ILDAAEEAGLSLPYSCRAGA 42

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-23
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C G + SGT+DQS+QSFLDDDQI  G+VLTC AYPTSD TI+TH+EE L
Sbjct:   45 GACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 98

HSP 2 Score: 43.8986 bits (102), Expect = 1.289e-23
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLPYSCRAGA
Sbjct:   27 ILDAAEEAGLDLPYSCRAGA 46

The following BLAST results are available for this feature:

BLAST of BQ622929 vs. ExPASy Swiss-Prot

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109


Match Name	E-value	Identity	Description
FER_SOLLS	5.844e-24	76.79	Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1	[more]
FER_SPIMA	5.844e-24	70.37	Ferredoxin OS=Spirulina maxima PE=1 SV=2	[more]
FER2_DUNSA	5.844e-24	74.07	Ferredoxin-2 OS=Dunaliella salina PE=1 SV=1	[more]
FER1_SPIOL	9.595e-24	75.93	Ferredoxin-1, chloroplastic OS=Spinacia oleracea G...	[more]
FER_CHLFU	9.901e-24	75.93	Ferredoxin OS=Chlorella fusca PE=1 SV=1	[more]
FER_DATST	1.289e-23	75.00	Ferredoxin OS=Datura stramonium PE=1 SV=1	[more]
FER_DATQU	1.289e-23	75.00	Ferredoxin OS=Datura quercifolia PE=1 SV=1	[more]
FER_SOLLY	1.289e-23	71.43	Ferredoxin OS=Solanum lyratum PE=1 SV=1	[more]
FER_MARPO	1.289e-23	72.22	Ferredoxin OS=Marchantia polymorpha PE=1 SV=1	[more]
FER_SPIPL	1.289e-23	70.37	Ferredoxin OS=Spirulina platensis PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT