BQ622929

Overview
NameBQ622929
Unique NameBQ622929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:317..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.698e-23
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:   42 GSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEEDLTG 97          

HSP 2 Score: 34.6538 bits (78), Expect = 3.698e-23
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G +LPYSCRAG+
Sbjct:   24 ILDQAEEEGHELPYSCRAGS 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_DUNSA (Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.698e-23
Identity = 41/54 (75.93%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV SGTVDQS+QSFLDDDQ+  GFVLTC AY TSD TI TH+EE L
Sbjct:   41 GSCSSCAGKVESGTVDQSDQSFLDDDQMDSGFVLTCVAYATSDCTIVTHQEENL 94          

HSP 2 Score: 41.5874 bits (96), Expect = 3.698e-23
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAG+DLPYSCRAG+
Sbjct:   23 ILDAAEEAGVDLPYSCRAGS 42          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.698e-23
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSCTG V  GTVDQS+QSFLDDDQ+ +GF LTC  YPTS+ TIETHKE++L
Sbjct:   42 GACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          

HSP 2 Score: 41.9726 bits (97), Expect = 3.698e-23
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAE+AG+DLPYSCRAGA
Sbjct:   24 ILDAAEDAGIDLPYSCRAGA 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_THAWE (Ferredoxin OS=Thalassiosira weissflogii GN=petF PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 3.698e-23
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GKV  GT+DQSEQ+FLDDDQ+G GFVLTC AYP SD TI  H+E+EL
Sbjct:   45 GACSTCAGKVTEGTIDQSEQTFLDDDQMGAGFVLTCIAYPKSDCTILVHQEDEL 98          

HSP 2 Score: 42.743 bits (99), Expect = 3.698e-23
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            +LDAAEEAG+DLPYSCRAGA
Sbjct:   27 VLDAAEEAGIDLPYSCRAGA 46          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.812e-23
Identity = 41/54 (75.93%), Postives = 47/54 (87.04%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GK+ +G+VDQS+ +FLDDDQI +GFVLTC AYP SDVTIETHKEEEL
Sbjct:   42 GSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEEL 95          

HSP 2 Score: 36.1946 bits (82), Expect = 4.812e-23
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G DLPYSCRAG+
Sbjct:   24 ILDRAEEEGHDLPYSCRAGS 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.058e-23
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVV G VDQS+ SFLDD+QI  GFVLTC AYPTSDV IETHKEE+L
Sbjct:   94 GSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          

HSP 2 Score: 38.1206 bits (87), Expect = 6.058e-23
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   76 ILDHAEEVGIDLPYSCRAGS 95          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.263e-23
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ +FLDDDQI +GFVLTC AYP SDVTIETHKEE L G
Sbjct:   42 GSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEALTG 97          

HSP 2 Score: 34.6538 bits (78), Expect = 6.263e-23
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G +LPYSCRAG+
Sbjct:   24 ILDQAEEEGHELPYSCRAGS 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.263e-23
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:   42 GSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEDLTG 97          

HSP 2 Score: 34.6538 bits (78), Expect = 6.263e-23
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G +LPYSCRAG+
Sbjct:   24 ILDQAEEEGHELPYSCRAGS 43          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.914e-23
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP SDV IETHKE++L
Sbjct:   85 GSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          

HSP 2 Score: 38.1206 bits (87), Expect = 7.914e-23
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   67 ILDQAEEEGIDLPYSCRAGS 86          
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.914e-23
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP SDV IETHKE++L
Sbjct:   85 GSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          

HSP 2 Score: 38.1206 bits (87), Expect = 7.914e-23
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   67 ILDQAEEEGIDLPYSCRAGS 86          
The following BLAST results are available for this feature:
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SOLNI3.698e-2375.00Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER1_DUNSA3.698e-2375.93Ferredoxin-1 OS=Dunaliella salina PE=1 SV=1[more]
FER_EUGVI3.698e-2372.22Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_THAWE3.698e-2370.37Ferredoxin OS=Thalassiosira weissflogii GN=petF PE... [more]
FER_SOLAB4.812e-2375.93Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]
FER1_PEA6.058e-2377.78Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER_LYCCN6.263e-2376.79Ferredoxin OS=Lycium chinense PE=1 SV=1[more]
FER2_HYONI6.263e-2375.00Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER1_ORYSJ7.914e-2374.07Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI7.914e-2374.07Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT
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