BQ622929

Overview
NameBQ622929
Unique NameBQ622929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:317..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.151e-23
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+VSGTVDQSEQSFLDDDQI  G+VLTC AYP SDVTIET+KEEEL
Sbjct:   43 GACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96

HSP 2 Score: 33.4982 bits (75), Expect = 8.151e-23
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD+A +AG DLP SCRAGA
Sbjct:   25 ILDSAGDAGYDLPASCRAGA 44
[Close]
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_EQUTE (Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.151e-23
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVVSG+VDQSE SFLDD Q+ EGFVLTC A P SD+ IETHKEEEL
Sbjct:   41 GACSSCLGKVVSGSVDQSEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94

HSP 2 Score: 40.4318 bits (93), Expect = 8.151e-23
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAG DLP+SCRAGA
Sbjct:   23 ILDAAEEAGYDLPFSCRAGA 42
[Close]
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.061e-22
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV +G VDQS+ +FLDDDQ+ +GFVLTC AYP SDVTIETHKEEEL
Sbjct:   42 GSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95

HSP 2 Score: 36.1946 bits (82), Expect = 1.061e-22
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G DLPYSCRAG+
Sbjct:   24 ILDQAEEMGHDLPYSCRAGS 43
[Close]
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.061e-22
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKV  G VDQS+ SFLDD+QIGEG+VLTC AYP SD TIETHKEEEL
Sbjct:   42 GSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEEEL 95

HSP 2 Score: 38.5058 bits (88), Expect = 1.061e-22
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   24 ILDQAEEVGIDLPYSCRAGS 43
[Close]
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.338e-22
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GK+VSG +DQS+QSFLDDDQ+  G+VLTC AYP SD+ IETHKEEEL
Sbjct:   88 GSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141

HSP 2 Score: 38.1206 bits (87), Expect = 1.338e-22
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   70 ILDQAEEEGIDLPYSCRAGS 89
[Close]
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.381e-22
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GKV +GTVDQS+ +FLDDDQ+ +GFVLTC AYP SDV IETHKEEEL G
Sbjct:   42 GSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEEELTG 97

HSP 2 Score: 34.6538 bits (78), Expect = 1.381e-22
Identity = 15/20 (75.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G +LPYSCRAG+
Sbjct:   24 ILDQAEEEGHELPYSCRAGS 43
[Close]
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_EQUAR (Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.797e-22
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVVSG+VD+SE SFLDD Q+ EGFVLTC A P SD+ IETHKEEEL
Sbjct:   41 GACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEEL 94

HSP 2 Score: 40.4318 bits (93), Expect = 1.797e-22
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAG DLP+SCRAGA
Sbjct:   23 ILDAAEEAGYDLPFSCRAGA 42
[Close]
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.797e-22
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GKVV GTVDQS+QSFLDD Q+  G+VLTC AYP+SD T++TH+EE L
Sbjct:   45 GACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEESL 98

HSP 2 Score: 41.2022 bits (95), Expect = 1.797e-22
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEE G+DLPYSCRAGA
Sbjct:   27 ILDAAEEQGIDLPYSCRAGA 46
[Close]
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.266e-22
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP SDVTIETHKE EL G
Sbjct:   89 GSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 144

HSP 2 Score: 38.1206 bits (87), Expect = 2.266e-22
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEEAG DLPYSCRAG+
Sbjct:   71 ILDQAEEAGHDLPYSCRAGS 90
[Close]
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.338e-22
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 225
            G CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP SDVTIETHKE EL G
Sbjct:   42 GSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 97

HSP 2 Score: 38.1206 bits (87), Expect = 2.338e-22
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEEAG DLPYSCRAG+
Sbjct:   24 ILDQAEEAGHDLPYSCRAGS 43
The following BLAST results are available for this feature:
BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER1_SYNP28.151e-2381.48Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER1_EQUTE8.151e-2377.78Ferredoxin-1 OS=Equisetum telmateia PE=1 SV=1[more]
FER_TOBAC1.061e-2275.93Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FER_COLES1.061e-2277.78Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER_WHEAT1.338e-2274.07Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER_SCOJA1.381e-2275.00Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER1_EQUAR1.797e-2275.93Ferredoxin-1 OS=Equisetum arvense PE=1 SV=1[more]
FER1_CYAPA1.797e-2268.52Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]
FER_CAPAN2.266e-2269.64Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER_CAPAA2.338e-2269.64Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT
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