BQ622929 | Citrus Genome Database

Overview


Name	BQ622929
Unique Name	BQ622929
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	486

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1721	contig	Csv1_Contig1721:317..801.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.055e-20
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:   44 GACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97

HSP 2 Score: 38.891 bits (89), Expect = 2.055e-20
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE GLDLP+SCRAGA
Sbjct:   26 ILDVAEEQGLDLPFSCRAGA 45

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.055e-20
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:   44 GACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97

HSP 2 Score: 38.891 bits (89), Expect = 2.055e-20
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE GLDLP+SCRAGA
Sbjct:   26 ILDVAEEQGLDLPFSCRAGA 45

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.674e-20
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 222
            G CSSC G +  GTVDQS+Q+FLDDDQI  G VLTC AYPTS+  IETH+E+ +A
Sbjct:   45 GSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHREDAIA 99

HSP 2 Score: 40.0466 bits (92), Expect = 2.674e-20
Identity = 17/20 (85.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAGLDLP+SCR+G+
Sbjct:   27 ILDAAEEAGLDLPFSCRSGS 46

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.346e-20
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C G++VSG VDQS+ SFL+D  + +G+VLTC AYP SD  I THKE EL
Sbjct:  101 GACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

HSP 2 Score: 42.743 bits (99), Expect = 3.346e-20
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAG+DLPYSCRAGA
Sbjct:   83 ILDAAEEAGVDLPYSCRAGA 102

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.683e-20
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC G + +G VDQS+QSFLDD QI +GFVLTC AYP SD  I TH+EE +
Sbjct:   92 GACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145

HSP 2 Score: 39.6614 bits (91), Expect = 5.683e-20
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 3

Query:    6 LDAAEEAGLDLPYSCRAGA 62
            LDAAE AG+DLPYSCRAGA
Sbjct:   75 LDAAERAGMDLPYSCRAGA 93

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.888e-20
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CSSC GKVVSG VD S+ SFL+DD +  G+VLTC AY  SDV IETHKEEE+
Sbjct:   43 GSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96

HSP 2 Score: 37.7354 bits (86), Expect = 5.888e-20
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G+DLPYSCRAG+
Sbjct:   25 ILDNAEEIGIDLPYSCRAGS 44

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.888e-20
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+  G VDQS+ SFL+D    +G+VLTC AYP SD+ I THKEEEL
Sbjct:   44 GACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97

HSP 2 Score: 42.743 bits (99), Expect = 5.888e-20
Identity = 19/20 (95.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAEEAG+DLPYSCRAGA
Sbjct:   26 ILDAAEEAGVDLPYSCRAGA 45

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.040e-19
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+ SG+VDQS+ SFLDD Q  EG+VLTC +YP SD  I THKE +L
Sbjct:   98 GACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151

HSP 2 Score: 38.891 bits (89), Expect = 6.040e-19
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILDAAE AG++LPYSCRAGA
Sbjct:   80 ILDAAETAGVELPYSCRAGA 99

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.708e-18
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 219
            G CS+C GK+VSGTVDQSE SFLDD+QI +G+VLTC A P SDV IETHKE+EL
Sbjct:   40 GACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93

HSP 2 Score: 23.483 bits (49), Expect = 8.708e-18
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ++D A E   DLP SC+AGA
Sbjct:   23 LIDIASEKA-DLPLSCQAGA 41

[Close]

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.708e-18
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1

Query:   58 GPCSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELA 222
            G CSSC GKVV G VDQS+Q FLDD+Q+G+GF L C  YP S+ TI+TH+E  LA
Sbjct:   45 GSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYLA 99

HSP 2 Score: 31.9574 bits (71), Expect = 8.708e-18
Identity = 12/20 (60.00%), Postives = 17/20 (85.00%), Query Frame = 3

Query:    3 ILDAAEEAGLDLPYSCRAGA 62
            ILD AEE G++LP+SC +G+
Sbjct:   27 ILDGAEENGIELPFSCHSGS 46

The following BLAST results are available for this feature:

BLAST of BQ622929 vs. ExPASy Swiss-Prot

BLAST of BQ622929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109


Match Name	E-value	Identity	Description
FER_THEEB	2.055e-20	68.52	Ferredoxin-1 OS=Thermosynechococcus elongatus (str...	[more]
FER_SYNEN	2.055e-20	68.52	Ferredoxin-1 OS=Synechococcus elongatus naegeli GN...	[more]
FER2_NOSMU	2.674e-20	65.45	Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2	[more]
FER3_ARATH	3.346e-20	61.11	Ferredoxin-3, chloroplastic OS=Arabidopsis thalian...	[more]
FER_PHYPA	5.683e-20	64.81	Ferredoxin, chloroplastic OS=Physcomitrella patens...	[more]
FER_PANGI	5.888e-20	68.52	Ferredoxin OS=Panax ginseng PE=1 SV=1	[more]
FER1_RAPSA	5.888e-20	61.11	Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=...	[more]
FER3_MAIZE	6.040e-19	62.96	Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE...	[more]
FER2_EQUTE	8.708e-18	74.07	Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1	[more]
FERH_ANAVT	8.708e-18	63.64	Ferredoxin, heterocyst OS=Anabaena variabilis (str...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00020 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00020 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ622929 ID=BQ622929; Name=BQ622929; organism=Citrus sinensis; type=EST; length=486bp
TTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGC
AGGGCTGGGGCCTTGCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCG
TTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATTGGAGAAGGT
TTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGAC
TCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCAT
TATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCTT
TGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTTTTTAT
TTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATGAATGCGCATC
GTACCTAGAGGGGGAGGTTTCTCATCCCATCCGAACATGGTACCGTTCTA
TAATTAAGAGTCAAGCAAGAACAATAGATCTTTCGT