BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.813e-11
Identity = 46/154 (29.87%), Postives = 72/154 (46.75%), Query Frame = 3 
Query:    9 NGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            +G  L EALD I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      +  A PG+N+   +  +  +DI  G V S S   P      F AQ+ ++        +AGY  VL  H     C+  EL
Sbjct:  225 SGKTLIEALDCIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPQNVTTEVKSVEMHHESLPEASPGDNVGFNVKNVSVKDIRRGSVCSDSKNDPAKESKNFTAQVIVMN--HPGQISAGYTPVLDCHTAHIACKFAEL 376
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
EF1A3_OSCTI7.813e-1129.87Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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