BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.050e-20
Identity = 52/166 (31.33%), Postives = 86/166 (51.81%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQET 494
            W+ GP L +ALD  ++  +  N P R+P+ D +    +GTV +G+VE+G ++ GD ++ +P   Q  V +I      ++ A PG+N+   + GI + DI  G V   +  P   V  F AQ+ +L     ++   GYK V H+H     C+I E+  +   +D  T
Sbjct:  203 WYKGPSLLQALDAFKVPEKPINKPLRVPVEDVYSITGIGTVPVGRVETGVLKPGDKVIFLPADKQGDVKSIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGHLDSPPTVVRAFTAQIVVLN--HPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTT 366          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_THEAC (Elongation factor 1-alpha OS=Thermoplasma acidophilum GN=tuf PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQET 494
            W+ GP L +ALD  ++  +  N P R+P+ D +    +GTV +G+VE+G ++ GD ++ +P   Q  V +I      ++ A PG+N+   + GI + DI  G V   +  P   V  F AQ+ +L     ++   GYK V H+H     C I E+  +   +D  T
Sbjct:  203 WYKGPTLLQALDAFKVPEKPINKPLRIPVEDVYSITGIGTVPVGRVETGVLKPGDKVIFLPADKQGDVKSIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGHLDTPPTVVKAFTAQIIVLN--HPSVIAPGYKPVFHVHTAQVACRIDEIVKTLNPKDGTT 366          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 53/157 (33.76%), Postives = 85/157 (54.14%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+ GP L E LD++EI P+  + P R+PI + +    +G V +G+VE+G ++ GD ++ MP     +V +I     ++  A PG+N+   + G+E++DI  G V  S+  P     EF A  QI+ +      + GY  V+HIH     C I EL +
Sbjct:  209 WYTGPTLEEYLDQLEIPPKPVDKPLRIPIQEVYSISGVGVVPVGRVETGVLKVGDKVVFMPVGKVGEVRSIETHHTKIEKAEPGDNIGFNVRGVEKKDIKRGDVAGSLNVPPTVADEFTA--QIIVIWHPTAVSVGYTPVVHIHTASVACRITELTS 363          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_SULSO (Elongation factor 1-alpha OS=Sulfolobus solfataricus GN=tuf PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 52/157 (33.12%), Postives = 85/157 (54.14%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+NGP L E LD++E+ P+  + P R+PI D +    +GTV +G+VESG ++ GD ++ MP     +V +I     ++  A PG+N+   + G+E++DI  G V+     P     EF A  +I+ +        GY  V+H+H     C + EL +
Sbjct:  209 WYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTA--RIIVVWHPTALANGYTPVIHVHTASVACRVSELVS 363          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 55/155 (35.48%), Postives = 82/155 (52.90%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L EALD +E  P+  + P R+PI D +    +GTV +G+VE+G +R GD ++ MP     +V +I     R+  A PG+N+   + G+ + DI  G V   +  P     EF A++ I  +      T GY  V+HIH       IVE+
Sbjct:  210 WYNGPTLVEALDSLEPPPKPIDKPLRIPIQDVYAISGVGTVPVGRVETGVLRVGDKVVFMPPAKVGEVRSIETHHVRIEKAEPGDNIGFNVRGVSKRDIRRGDVAGHLDNPPTVAEEFTARVFI--IWHPTAITVGYTPVIHIHTASVASRIVEI 362          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+ GP L E LD  +  PR  + P RMPI D F     GTVV+G+VE+G ++ GD ++++P      V +I     ++  A PG+N+ + + GI +ED+  G VL  V        E +A  +I+ L        GY  V+HIH      +IVEL +
Sbjct:  218 WYQGPTLLEVLDTFQPPPRPTDKPLRMPIQDVFSITGAGTVVVGRVETGVLKVGDKVVIVPPAKVGDVRSIETHHMKLEQAQPGDNVGVNVRGINKEDVKRGDVLGKVDNIPTVAEEIVA--RIVVLWHPTAIGPGYAPVMHIHTATVPVQIVELVS 372          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.571e-19
Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L E LD  +  PR  + P R+PI D F     GTVV+G+VE+G ++ GD ++V+P      V +I     ++  A PG+N+ + + GI +ED+  G VL  V        E IA  +I+ L        GY  V+HIH      +I EL
Sbjct:  218 WYNGPTLLEVLDTFQPPPRPTDKPLRLPIQDVFSITGAGTVVVGRVETGVLKAGDRVVVVPPAKVGDVRSIETHHMKLEQAQPGDNVGVNVRGINKEDVKRGDVLGKVDNIPTVTEEIIA--RIVVLWHPTAIGPGYAPVMHIHTATVPVQITEL 370          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.679e-19
Identity = 53/155 (34.19%), Postives = 80/155 (51.61%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W++GPCL+EA D  +  PR  + P R+PI D +  K +GTV +G+VE+G ++ GD +++ P KA  +V +I      ++ A PG+N+   + G+E+  +  G V      P     EF    +I  L       AGY  VLHIH         EL
Sbjct:  209 WYDGPCLYEAFDFFKEPPRPIDKPLRIPIQDVYSIKGVGTVPVGRVETGVLKVGDKIIINPPKAVGEVKSIETHHTPLQEAIPGDNIGFNVKGVEKSQLRRGDVAGHTTNPPTVAEEFTG--RIFVLYHPTAIAAGYTPVLHIHTATVPVTFEEL 361          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.736e-18
Identity = 51/155 (32.90%), Postives = 78/155 (50.32%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP L EALD+ +   +  N P R+PI D +    +GTV +G+VE+G +R GD ++  P     +V +I     ++  A PG+N+   + G+ ++DI  G V      P     EF AQ+ +L+       T GY  V H H     C  +EL
Sbjct:  205 WYKGPTLVEALDKFQPPEKPTNLPLRIPIQDVYSITGVGTVPVGRVETGILRPGDKVVFEPAGVSGEVKSIEMHHEQIPQAEPGDNIGFNVRGVSKKDIKRGDVCGHPDNPPTVAEEFTAQIVVLQ--HPTAITVGYTPVFHAHTAQVACTFIEL 357          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.268e-18
Identity = 53/155 (34.19%), Postives = 80/155 (51.61%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L EA D ++   +  + P R+PI D +    +GTV +G+VESG +R GD ++  P     +V +I      ++ A PG+N+   + G+ ++DI  G V      P   V +F AQL +L+       T GY  V+H H     C  VEL
Sbjct:  201 WYNGPTLLEAFDLLKPPEKLVDKPLRIPIQDVYSISGVGTVPVGRVESGVLRVGDKVVFEPAGVSGEVKSIEMHHEPIQEAYPGDNIGFNVRGVSKKDIRRGDVAGHPDNPPTVVKDFTAQLVVLQ--HPTAITVGYTPVVHAHTAQIACRFVEL 353          
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
EF1A_THEVO7.050e-2031.33Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_THEAC1.571e-1931.33Elongation factor 1-alpha OS=Thermoplasma acidophi... [more]
EF1A_SULTO1.571e-1933.76Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_SULSO1.571e-1933.12Elongation factor 1-alpha OS=Sulfolobus solfataric... [more]
EF1A_STAMF1.571e-1935.48Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_PYRCJ1.571e-1935.03Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_PYRAR1.571e-1936.13Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_THEPD2.679e-1934.19Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_METJA1.736e-1832.90Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_ARCFU2.268e-1834.19Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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