BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.868e-18
Identity = 48/155 (30.97%), Postives = 79/155 (50.97%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L E +D  +   +    P R+PI D +    +GTV +G+VE+G +R GD ++  P  A  ++  +     ++  A PG+N+   + G+ ++DI  G VL     P     +F AQ+ +L+    ++ T GY  V H H     C  +EL
Sbjct:  205 WYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIRPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTVAADFTAQIVVLQ--HPSVMTVGYTPVFHAHTAQIACTFMEL 357          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METAC (Elongation factor 1-alpha OS=Methanosarcina acetivorans GN=tuf PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18
Identity = 47/155 (30.32%), Postives = 81/155 (52.26%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP + +ALD ++   +    P R+P+ D +    +GTV +G+VE+G +++GD ++ MP  A  +V +I      +  A PG+N+   + GI + D+  G V      P     EF+ Q+ +L+    +  TAGY  V H H     C+++ L
Sbjct:  201 WYKGPVIMQALDELKEPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGVMKKGDKVIFMPGGAGGEVKSIEMHHEEIPQAYPGDNIGWNVRGIGKNDVRRGDVCGHTDNPPKVADEFVGQIVVLQ--HPSAITAGYTPVFHAHTSQIACQLISL 353          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18
Identity = 50/166 (30.12%), Postives = 86/166 (51.81%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQET 494
            W+ GP + EAL+ ++   +    P R+P+ D +    +GTV +G+VE+G +++GD ++ MP  A  +V +I      +  A PG+N+   + GI + D+  G V      P     EF+ Q+ +L+    +  TAGY  V H H     C+++ L   N+  D +T
Sbjct:  201 WYKGPAIMEALNSLKEPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGVMKKGDKVVFMPGGAGGEVKSIEMHHEEIPQATPGDNIGWNVRGIGKNDVRRGDVCGHADNPPKVADEFVGQIVVLQ--HPSAITAGYTPVFHAHTSQIACQLIAL---NKKLDPKT 361          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L E +D  +   +    P R+PI D +    +GTV +G+VE+G ++ GD ++  P  A  ++  +     ++  A PG+N+   + G+ ++DI  G VL     P     +F AQ+ +L+    ++ T GY  V H H     C  +EL
Sbjct:  205 WYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTVAADFTAQIVVLQ--HPSVMTVGYTPVFHAHTAQIACTFMEL 357          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18
Identity = 47/155 (30.32%), Postives = 79/155 (50.97%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L E +D  +   +    P R+PI D +    +GTV +G+VE+G ++ GD ++  P  A  ++  +     ++  A PG+N+   + G+ ++DI  G VL     P     +F AQ+ +L+    ++ T GY  V H H     C  +EL
Sbjct:  205 WYNGPTLAEVIDAFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTVAADFTAQIVVLQ--HPSVMTVGYTPVFHAHTAQIACTFMEL 357          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.470e-17
Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ G  LF  LD +E+  +    P R+PI D +    +GTV +G+VE+G +++G ++  MP     +V +I      +  A PG+N+   + GI ++D+  G V  +   P A   EF AQ+ +L+    +  T GY  V H H     C   EL
Sbjct:  201 WYKGKTLFGLLDELEVPDKPTEKPLRVPIQDAYSISGIGTVPVGRVETGILKKGMNVTFMPANKSGEVKSIEMHHEEIPQAVPGDNIGFNVRGIGKDDVRRGDVCGASDNPPAVAEEFTAQIVVLQ--HPSAITVGYTPVFHCHTAQTACTFTEL 353          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.470e-17
Identity = 48/155 (30.97%), Postives = 83/155 (53.55%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L EALD+++   +  + P R+P+ + +     GTV +G+VE+G +R GD ++ MP     +V +I     +++ A PG+N+   + G+ + DI  G V   + KP     EF  + +I  +   +  T GY  V+H+H       I+E+
Sbjct:  209 WYNGPTLVEALDQLQPPAKPVDKPLRIPVQNVYSIPGAGTVPVGRVETGVLRVGDKVVFMPPGVVGEVRSIEMHYQQLQQAEPGDNIGFAVRGVSKSDIKRGDVAGHLDKPPTVAEEF--EARIFVIWHPSAITVGYTPVIHVHTASVSSRIIEI 361          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-17
Identity = 46/155 (29.68%), Postives = 79/155 (50.97%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP + E +D  +   +  N P R+PI D +    +GTV +G+VE+G ++ GD ++  P  A  ++  +     ++  A PG+N+   + G+ ++DI  G VL     P    T+F AQ+ +L+    ++ T GY  V H H     C   E+
Sbjct:  205 WYKGPTIAEVIDGFQPPEKPTNLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVVFEPAGAIGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTVATDFTAQIVVLQ--HPSVLTVGYTPVFHTHTAQIACTFAEI 357          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_CENSY (Elongation factor 1-alpha OS=Cenarchaeum symbiosum GN=tuf PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-17
Identity = 48/144 (33.33%), Postives = 78/144 (54.17%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIH 428
            W+ G  L E+ D  ++  +    P R+PI D +    +GTV +G+VE+G+++ GD ++VMP+ AQ ++ +I      +  A  G+N+   L GIE++DI  G VL   A P     EF+AQ+ ++          GY  V+H H
Sbjct:  212 WYKGKTLLESFDDFKMAEKPVGKPLRVPIQDVYTITGVGTVPVGRVETGTMKPGDKIVVMPSGAQGEIKSIETHHTEMPSAEAGDNIGFNLRGIEKKDIKRGDVLGDPANPPKVAKEFLAQIIVIH--HPTALAPGYTPVMHCH 353          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.507e-17
Identity = 46/155 (29.68%), Postives = 82/155 (52.90%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ G  + EAL+ +++  +    P R+P+ D +    +GTV +G+VE+G++++GD ++ MP  A  +V +I      +  A PG+N+   + GI + D+  G V      P      F+ Q+ +L+    +  TAGY  V H H     C+++EL
Sbjct:  201 WYKGVTMMEALNNLKVPEKPSTLPLRIPVEDAYTISGIGTVPVGRVETGTMKKGDKVVFMPGGAAGEVKSIEMHHEEIPQALPGDNIGWNVRGIGKADVRRGDVCGHTDNPPKVADTFVGQIVVLQ--HPSAITAGYTPVFHAHTSQIACQLIEL 353          
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
EF1A_METM73.868e-1830.97Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METAC6.598e-1830.32Elongation factor 1-alpha OS=Methanosarcina acetiv... [more]
EF1A_METMA8.618e-1830.12Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_METM68.618e-1830.32Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM58.618e-1830.32Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METHJ1.470e-1731.61Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_AERPE1.470e-1730.97Elongation factor 1-alpha OS=Aeropyrum pernix GN=t... [more]
EF1A_METVS1.920e-1729.68Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_CENSY1.920e-1733.33Elongation factor 1-alpha OS=Cenarchaeum symbiosum... [more]
EF1A_METBF2.507e-1729.68Elongation factor 1-alpha OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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