BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.275e-17
Identity = 46/155 (29.68%), Postives = 79/155 (50.97%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L + +D  +   +    P R+PI D +    +GTV +G+VE+G ++ GD ++  P  A  ++  +     ++  A PG+N+   + G+ ++DI  G VL     P     +F AQ+ +L+    ++ T GY  V H H     C  +EL
Sbjct:  205 WYNGPTLAQVIDGFQPPEKPTTLPLRLPIQDVYSITGVGTVPVGRVETGIIKPGDKVVFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTVAADFTAQIVVLQ--HPSVMTVGYTPVFHAHTAQIACTFMEL 357          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_NANEQ (Elongation factor 1-alpha OS=Nanoarchaeum equitans GN=tuf PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.277e-17
Identity = 49/148 (33.11%), Postives = 81/148 (54.73%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIID--KFKDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIH 428
            W+NGP L+EALD ++      + P R+PI      K +GTV+ G+VE+G ++ GD ++V+P+K    A  +V +I      +  A PG+N+   + GIE+ D++ G V   +  P     E +A + +  +   +  T GY  VLH+H
Sbjct:  202 WYNGPTLYEALDMLKPPQLPVDLPLRIPIQSALSIKGIGTVLTGRVETGKLKPGDKIIVLPSKKPNGAIGEVKSIEMHHKPLEEALPGDNIGFSVRGIEKGDVMRGDVAGHLDNPPTVAEEIVALIHV--IYHPSAITVGYAPVLHVH 347          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METVA (Elongation factor 1-alpha OS=Methanococcus vannielii GN=tuf PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.277e-17
Identity = 46/155 (29.68%), Postives = 79/155 (50.97%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP + E +D  +   +  N P R+PI D +    +GTV +G+VE+G ++ GD ++  P  A  ++  +     ++  A PG+N+   + G+ ++DI  G VL     P    T+F AQ+ +L+    ++ T GY  V H H     C   E+
Sbjct:  205 WYKGPTIAEVIDGFQPPEKPTNLPLRLPIQDVYTITGVGTVPVGRVETGIIKPGDKVVFEPAGAIGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPTVATDFTAQIVVLQ--HPSVLTDGYTPVFHTHTAQIACTFAEI 357          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METTH (Elongation factor 1-alpha OS=Methanobacterium thermoautotrophicum GN=tuf PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 48/155 (30.97%), Postives = 79/155 (50.97%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ G  L EALD +E   +  + P R+PI D +    +GTV +G+VE+G +++G++++  P     +V +I      +  A PG+N+   + G+ + DI  G V   +  P     EF AQ+ +L+     + T GY  V H H     C  +EL
Sbjct:  191 WYKGKTLVEALDDLEAPEKPVDLPLRIPIQDVYSITGVGTVPVGRVETGVLKKGENVIFEPAGVSGEVKSIEMHHEMIEQAEPGDNIGFNVRGVGKNDIRRGDVAGHLDNPPKVAKEFTAQIVVLQ--HPGVITVGYTPVFHCHTAQVACTFLEL 343          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 50/169 (29.59%), Postives = 80/169 (47.34%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEK 503
            W+ GP L  ALD  +   +  + P R+PI D +    +GTV +G+VE+G +++G  +  MP     ++ +I      +  A PG+N+   + GI + DI  G V     +P     EF AQ+ +L+    +  T GY  V H H     C  +EL         +T E+
Sbjct:  201 WYKGPALIPALDTFKEPSKPTDKPLRLPIQDSYSISGIGTVPVGRVETGIMKKGMKVSFMPANKDGEIKSIEMHHEEIPQAVPGDNVGFNVRGIAKGDIRRGDVCGPAEQPPTVADEFTAQVVVLQ--HPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEE 367          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP + +AL+ ++   +  N P R+P+ D +    +GTV +G+VE+G +++GD ++  P     +V +I      +  A PG+N+   + GI + DI  G V   V  P     EF AQ+ +L+    +  +AGY  V H H     C I E+
Sbjct:  203 WYTGPTVLDALNALKEPQKPVNLPLRIPVQDVYSISGVGTVPVGRVETGVLKKGDKVIFEPAHVSGEVKSIEIHHQEIPEAYPGDNIGWNVRGIGKNDIRRGDVCGHVDNPPTVAKEFTAQIVVLQ--HPSAISAGYTPVFHCHTAQVACTITEI 355          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_HYPBU (Elongation factor 1-alpha OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=tuf PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.295e-17
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDP-NGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+NGP L EALD     P+ P + P R+PI + +    +GTV +G+VE+G ++ GD ++ MP     +V +I      ++ A PG+N+   + GI ++DI  G V   V KP     EF A  +I  +   +  T GY  V+H H       I E+
Sbjct:  210 WYNGPTLVEALDTYIQPPKKPVDKPLRIPIQNVYSIPGVGTVPVGRVETGVLKVGDKVVFMPPGVVGEVRSIEMHHQPLQQAEPGDNIGFNVRGISKKDIRRGDVAGHVDKPPTVAEEFTA--RIFVIWHPSAITVGYTPVIHAHTASIAARITEI 363          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.528e-17
Identity = 51/157 (32.48%), Postives = 78/157 (49.68%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+ GP L E  D  +   R  + P RMPI D F     GTVV+G+VE+G ++ GD ++++P      V +I     ++  A PG+N+ + + GI +ED+  G VL           E +A  +I+ L        GY  V+HIH      +I EL +
Sbjct:  218 WYTGPTLLEVFDSFQPPQRPVDKPLRMPIQDVFTITGAGTVVVGRVETGVLKVGDRVVIVPPAKVGDVRSIETHHMKLEQAQPGDNIGVNVRGIAKEDVKRGDVLGKPDNVPTVAEEIVA--RIVVLWHPTAIGPGYAPVMHIHTATVPVQITELVS 372          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METKA (Elongation factor 1-alpha OS=Methanopyrus kandleri GN=tuf PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.528e-17
Identity = 54/165 (32.73%), Postives = 83/165 (50.30%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMP-------NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVT---EFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W++GP L EALD +E   +  + P R+PI D +    +GTV +G+VE+G +  GD++   P        K + +V +I      +  A PG+N+   + G+ + DI  G V     +P   VT    FIAQ+ +L+    +  TAGY  V H H     C+  EL
Sbjct:  191 WYDGPTLLEALDNLEPPEKPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLEVGDTVRFEPAYTATGGRKGEGEVRSIEMHHEEIERAEPGDNIGFNVKGVGKNDISRGDVACHPDEPATVVTPDDTFIAQIVVLQ--HPSAITAGYTPVFHCHTAQVACKFEEL 353          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.244e-16
Identity = 51/169 (30.18%), Postives = 80/169 (47.34%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEK 503
            W+ GP L EALD  +   +  + PFR+PI D +    +GTV +G++E+G +++G  +  MP     ++ +I         A PG+N+   + G+ + DI  G V      P     EF AQ+ +L+    +  T GY  V H H     C  VEL         +T E+
Sbjct:  201 WYTGPTLLEALDTFKEPDKPTDKPFRLPIQDVYSISGIGTVPVGRIETGIMKKGMKVSFMPANKDGEIKSIEMHHEEQPQALPGDNVGFNVRGVGKNDIRRGDVCGPADIPPTVADEFTAQIVVLQ--HPSAITVGYTPVFHCHTAQIACTFVELRKKLDPRSGQTKEE 367          
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
EF1A_METMP3.275e-1729.68Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_NANEQ4.277e-1733.11Elongation factor 1-alpha OS=Nanoarchaeum equitans... [more]
EF1A_METVA4.277e-1729.68Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METTH5.586e-1730.97Elongation factor 1-alpha OS=Methanobacterium ther... [more]
EF1A_METB65.586e-1729.59Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_METTP7.295e-1730.97Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_HYPBU7.295e-1733.97Elongation factor 1-alpha OS=Hyperthermus butylicu... [more]
EF1A_PYRAE9.528e-1732.48Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_METKA9.528e-1732.73Elongation factor 1-alpha OS=Methanopyrus kandleri... [more]
EF1A_METPE1.244e-1630.18Elongation factor 1-alpha OS=Methanosphaerula palu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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