BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_EUGGR (Elongation factor 1-alpha OS=Euglena gracilis GN=TEF PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 47/158 (29.75%), Postives = 75/158 (47.47%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+ G  L  ALD +E   R  + P R+P+ D +K   +GTV +G+VE+G ++ GD +   PN    +V ++      +  A PG+N+   +  +  +DI  G+V S+    P     +F AQ+ IL          GY  VL  H     C+   + T
Sbjct:  210 WYKGLTLIGALDNLEPPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGDVVTFAPNNLTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKDIRRGYVASNAKNDPAKEAADFTAQVIILN--HPGQIGNGYAPVLDCHTCHIACKFATIQT 365          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.869e-13
Identity = 49/157 (31.21%), Postives = 71/157 (45.22%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+ GP L  ALD  +I  R    P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +  ++      V  A PG N+   + G+  +DI  GFV S      A  TE      I+      I  AGY  V+  H     C+  EL T
Sbjct:  210 WYKGPTLCAALDSFKIPKRPIAKPLRLPLQDVYKIGGIGTVPVGRVETGVLKAGMVITFAPKGCSAECKSVEMHHEEVPEAAPGNNVGFNVKGLSVKDIKRGFVASDSKNDPATDTESFVSHTIVMNHPGEI-KAGYTPVIDCHTAHIACKFEELLT 365          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.893e-13
Identity = 47/159 (29.56%), Postives = 78/159 (49.06%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQV----KVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ G  + EAL+ ++   +    P R+PI D +    +G V +G+VE+G +++GD ++  P    V    +V +I      +  A PG+N+   + GIE+  I  G V   V K      EF AQ+ +L+    +  TAGY  V H H     C + ++
Sbjct:  201 WYTGVTILEALNALKEPEKPTQLPLRVPIQDVYTISGIGLVPVGRVETGIMKKGDKVIFRPGIDGVGHAGEVKSIEMHHEEIPQALPGDNIGFNVRGIEKNLIRRGDVCGHVDKQPTVAVEFKAQVVVLQ--HPSAITAGYTPVFHCHTAQVACTLTQI 357          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: SELB_METJA (Selenocysteine-specific elongation factor OS=Methanocaldococcus jannaschii GN=selB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 3
Query:   33 LDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILEL 377
            LD ++I  RD N   +MPI   FK   +GTVV G +  G V  GD+L ++P   +VKV +I C    V  A  G+ + + L G+E E +  G +L+S    +  V +FIA+++ILEL
Sbjct:  177 LDSLDIK-RDINSYLKMPIDHAFKIKGVGTVVTGTIHKGKVEVGDNLRILPINHEVKVKSIQCFKQDVSIAYAGDRVGMALMGVEPESLFRGCILTSEDTKLKVVDKFIAKVKILEL 292          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 42/155 (27.10%), Postives = 75/155 (48.39%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ G  L + LD ++   +  + P R+PI D +    +GTV +G++E+G ++  +++   P     +V +I      +  A PG+N+   + G+ + DI  G V  +   P +   EF AQ+ +L+     + T GY  V H H     C  + L
Sbjct:  191 WYKGNTLVQELDALDEPDKPVDLPLRLPIQDVYSITGVGTVPVGRIETGILKTAENIAFEPAGVTGEVKSIEMHHEVLDKAEPGDNVGFNVRGVGKNDIKRGDVAGTTQNPPSVAKEFKAQIVVLQ--HPGVMTVGYTPVFHAHTAQVACTFLSL 343          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_EIMBO (Elongation factor 1-alpha (Fragment) OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 46/156 (29.49%), Postives = 74/156 (47.44%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ G  L EALD +E   R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P   Q +V ++     ++  A PG+N+   +  +  +D+  G V S S   P  A   F  Q Q++ L        GY  V+  H     C+   L
Sbjct:  107 WYKGKILVEALDNVEPPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVCFAPTGLQTEVKSVEMHHTQLEQAVPGDNVGFNVKNVSVKDVKRGHVASDSKNDPAKAAASF--QAQVIVLHHPGQINPGYSPVVDCHTAHIACKFAVL 260          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_DICDI (Elongation factor 1-alpha OS=Dictyostelium discoideum GN=eef1a1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.860e-12
Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL-SSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVEL 461
            W+ GP L EALD I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++     ++  A PG+N+   +  +  ++I  G V   S   P     +F+AQ+ +L         AGY  VL  H     C+  E+
Sbjct:  210 WYKGPTLLEALDAIVEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLN--HPGQIHAGYSPVLDCHTAHIACKFTEI 363          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_CRYPV (Elongation factor 1-alpha OS=Cryptosporidium parvum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.860e-12
Identity = 45/152 (29.61%), Postives = 73/152 (48.03%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECE 449
            W+ G  L EALD +E   R  + P R+P+ D +K   +GTV +G+VE+G +R G ++   P     +V ++     ++  A PG+N+   +  +  +DI  GFV S     P     +F AQ+ +L          GY  V+  H     C+
Sbjct:  206 WYKGKTLVEALDTMEPPKRPTDKPLRLPLQDVYKIGGVGTVPVGRVETGIIRPGMNVTFAPAGVTTEVKSVEMHHEQMPEAVPGDNVGFNVKNVSIKDIKRGFVASDAKNDPAKGCEDFTAQVIVLN--HPGEIKNGYSPVVDCHTAHISCK 355          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.429e-12
Identity = 49/171 (28.65%), Postives = 79/171 (46.20%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L EALD+I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      ++ A PG+N+   +  +  +D+  G+V S S   P      F AQ+ I+          GY  VL  H      +  E+ T       +  EKE
Sbjct:  210 WYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAASFTAQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKE 378          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.429e-12
Identity = 49/171 (28.65%), Postives = 80/171 (46.78%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L EALD+I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P+    +V ++      ++ A PG+N+   +  +  +D+  G+V S S   P      F AQ+ I+          GY  VL  H      +  E+ T       +  EKE
Sbjct:  210 WYKGPTLLEALDQISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEKE 378          
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
EF1A_EUGGR2.197e-1329.75Elongation factor 1-alpha OS=Euglena gracilis GN=T... [more]
EF1A1_EUPCR2.869e-1331.21Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_UNCMA4.893e-1329.56Elongation factor 1-alpha OS=Uncultured methanogen... [more]
SELB_METJA6.391e-1338.46Selenocysteine-specific elongation factor OS=Metha... [more]
EF1A_METST6.391e-1327.10Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_EIMBO6.391e-1329.49Elongation factor 1-alpha (Fragment) OS=Eimeria bo... [more]
EF1A_DICDI1.860e-1229.49Elongation factor 1-alpha OS=Dictyostelium discoid... [more]
EF1A_CRYPV1.860e-1229.61Elongation factor 1-alpha OS=Cryptosporidium parvu... [more]
EF1A_SOLLC2.429e-1228.65Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A2_DAUCA2.429e-1228.65Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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