BQ622931

Overview
NameBQ622931
Unique NameBQ622931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.172e-12
Identity = 49/171 (28.65%), Postives = 79/171 (46.20%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L EALD+I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      ++ A PG+N+   +  +  +D+  GFV S S   P      F +Q+ I+          GY  VL  H      +  E+ T       +  EKE
Sbjct:  210 WYKGPTLLEALDQINDAKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKGAASFTSQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKE 378          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 49/171 (28.65%), Postives = 78/171 (45.61%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L +ALD+I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      +  A PG+N+   +  +  +D+  G+V S S   P      F AQ+ I+          GY  VL  H      +  EL T       +  EKE
Sbjct:  210 WYKGPTLLDALDQISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHESLTEAHPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIIN--HPGQIGNGYAPVLDCHTSHIAVKFAELMTKIDRRSGKELEKE 378          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 50/171 (29.24%), Postives = 77/171 (45.03%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L +ALD I    R  + P R+P+ D +K   +GTV +G+VE+G V+ G  +   P     +V ++      +  A PG+N+R  +  +  +D+  G V S S   P      F +Q+ I+          GY  VL  H      +  EL T       +  EKE
Sbjct:  210 WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMLVTFAPTGLTTEVKSVEMHHEALTEALPGDNVRFNVKNVAVKDLKHGLVASNSKDDPAKDAANFTSQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKE 378          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 49/171 (28.65%), Postives = 80/171 (46.78%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L EALD+I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P+    +V ++      ++ A PG+N+   +  +  +D+  G+V S S   P      F +Q+ I+          GY  VL  H      +  EL T       +  EKE
Sbjct:  210 WYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKE 378          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.143e-12
Identity = 48/171 (28.07%), Postives = 80/171 (46.78%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L +ALD+I    R  + P R+P+ D +K   +GTV +G+VE+G+++ G  +   P+    +V ++      +  A PG+N+   +  +  +D+  G+V S S   P      F +Q+ I+          GY  VL  H      +  EL T       +  EKE
Sbjct:  210 WYKGPTLLDALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKPGMVVTFGPSGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVSVKDLKRGYVASNSKDDPAKGAASFTSQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKE 378          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.066e-12
Identity = 49/171 (28.65%), Postives = 78/171 (45.61%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L EALD I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      ++ A PG+N+   +  +  +D+  G+V S S   P      F +Q+ I+          GY  VL  H      +  EL T       +  EKE
Sbjct:  210 WYKGPTLLEALDLINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASGSKDDPAKEAASFTSQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKE 378          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.066e-12
Identity = 50/170 (29.41%), Postives = 80/170 (47.06%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMP-NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTE-FIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHE 500
            W+ GP LFE LD ++   R    P R+P+ D +K   +GTV +G+VE+G ++ G  +   P  KA V+V ++      V  A PG+N+   +  +  +DI  G V           TE F+A + I    D+     GY  VL  H     C+   + +      ++TH+
Sbjct:  238 WYTGPTLFEVLDAMKPPKRPTEDPLRLPLQDVYKIGGIGTVPVGRVETGILKAGMQVTFEPAGKAAVEVKSVEMHHTSVPQAIPGDNVGFNVK-LTVKDIKRGDVCGDTKNDPPIPTECFLANVII---QDHKNIRNGYTPVLDCHTAHIACKFASILSKKDKRGKQTHD 403          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.229e-12
Identity = 47/158 (29.75%), Postives = 74/158 (46.84%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELAT 467
            W+ GP L EALD+I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      +  A PG+N+   +  +  +D+  GFV S S   P      F +Q+ I+          GY  VL  H      +  EL T
Sbjct:  210 WYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFAELVT 365          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.229e-12
Identity = 48/171 (28.07%), Postives = 78/171 (45.61%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ GP L EALD+I    R  + P R+P+ D +K   +GTV +G+VE+G ++ G  +   P     +V ++      +  A PG+N+   +  +  +D+  G+V S S   P      F +Q+ I+          GY  VL  H      +  E+ T       +  EKE
Sbjct:  210 WYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGMIKPGMVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKGAANFTSQVIIMN--HPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKE 378          
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.205e-11
Identity = 46/171 (26.90%), Postives = 79/171 (46.20%), Query Frame = 3
Query:    3 WWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELATSNRSEDQETHEKE 506
            W+ G  L +ALD ++   R  + P R+P+ D +K   +GTV +G+VE+G ++ G  L   P     +  ++      +  A PG+N+   +  +  +D+  G+V S S   P    T F+AQ+ +L          GY  VL  H     C+  E+ +       +  E+E
Sbjct:  210 WFTGSTLIDALDALDQPKRPKDKPLRLPLQDVYKIGGIGTVPVGRVETGLLKPGMVLTFAPMNITTECKSVEMHHESLTEAEPGDNVGFTVKNLSVKDLRRGYVASDSKNDPAKDTTNFLAQVIVLN--HPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEE 378          
The following BLAST results are available for this feature:
BLAST of BQ622931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
EF1A_TOBAC3.172e-1228.65Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOYBN4.143e-1228.65Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_PEA4.143e-1229.24Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_ORYSJ4.143e-1228.65Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A1_DAUCA4.143e-1228.07Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_MAIZE7.066e-1228.65Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1AS_PORPU7.066e-1229.41Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_WHEAT9.229e-1229.75Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_ARATH9.229e-1228.07Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_STYLE1.205e-1126.90Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622931 ID=BQ622931; Name=BQ622931; organism=Citrus sinensis; type=EST; length=523bp
CATGGTGGAATGGCCCCTGTCTTTTTGAAGCCCTTGATCGTATTGAGATA
ACTCCTCGAGATCCTAATGGTCCATTTAGGATGCCTATAATTGACAAATT
CAAGGACATGGGAACTGTTGTTATGGGGAAGGTGGAATCTGGTAGTGTAC
GGGAGGGGGATTCCTTGTTGGTCATGCCAAACAAGGCTCAAGTTAAAGTT
CTGGCCATATACTGTGATGACAATAGGGTTAGGCATGCAGGACCCGGTGA
AAATCTACGGATCAGATTATCTGGAATTGAAGAGGAAGATATACTATCTG
GTTTTGTCTTGTCAAGTGTTGCAAAACCAGTAGCCGCAGTCACTGAATTT
ATTGCCCAGTTGCAGATTCTTGAGTTGCTGGACAATGCAATTTTTACGGC
CGGCTACAAGGCTGTTTTACACATTCATGCTGTTGTCGAGGAATGTGAGA
TTGTTGAACTTGCTACATCAAATCGATCTGAAGACCAAGAAACCCATGAA
AAAGAAAGTTCTCTTTGGTAAGA
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