BQ622932

Overview
NameBQ622932
Unique NameBQ622932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622932_ssr237 microsatellite BQ622932_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ622932 vs. ExPASy Swiss-Prot
Match: HBL3_ORYSJ (Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. japonica GN=HB3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.092e-12
Identity = 32/50 (64.00%), Postives = 42/50 (84.00%), Query Frame = 3 
Query:  402 STVQLRKAGKMTVRESTLKKLGAVHFKSGVGNEHFEGTKFALLETIKEAV 551
            +  QLRK G++TVR++T+K+LG+ HFK+GV + HFE  KFALLETIKEAV
Sbjct:   87 AAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDAHFEVAKFALLETIKEAV 136
[Close]
BLAST of BQ622932 vs. ExPASy Swiss-Prot
Match: HBL_ZEAMP (Non-symbiotic hemoglobin OS=Zea mays subsp. parviglumis GN=HB PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 3 
Query:  402 STVQLRKAGKMTVRESTLKKLGAVHFKSGVGNEHFEGTKFALLETIKEAV 551
            +  QLRKAGK+TVRE+TLK+LGA H + GV + HFE T FALLETIKEA+
Sbjct:   84 AAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEAL 133
[Close]
BLAST of BQ622932 vs. ExPASy Swiss-Prot
Match: HBL_MAIZE (Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.134e-11
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 3 
Query:  402 STVQLRKAGKMTVRESTLKKLGAVHFKSGVGNEHFEGTKFALLETIKEAV 551
            +  QLRKAGK+TVRE+TLK+LGA H + GV + HFE T FALLETIKEA+
Sbjct:   84 AAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEAL 133
[Close]
BLAST of BQ622932 vs. ExPASy Swiss-Prot
Match: HBL4_ORYSJ (Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. japonica GN=HB4 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 28/50 (56.00%), Postives = 41/50 (82.00%), Query Frame = 3 
Query:  402 STVQLRKAGKMTVRESTLKKLGAVHFKSGVGNEHFEGTKFALLETIKEAV 551
            +  QLRK G++TVR++T+K+LG+ HFK+GV + HFE  +FALLETIK+ +
Sbjct:   84 AAAQLRKTGRVTVRDTTIKRLGSTHFKNGVSDTHFEVARFALLETIKDGI 133
The following BLAST results are available for this feature:
BLAST of BQ622932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HBL3_ORYSJ5.092e-1264.00Non-symbiotic hemoglobin 3 OS=Oryza sativa subsp. ... [more]
HBL_ZEAMP1.134e-1168.00Non-symbiotic hemoglobin OS=Zea mays subsp. parvig... [more]
HBL_MAIZE1.134e-1168.00Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV... [more]
HBL4_ORYSJ9.604e-1156.00Non-symbiotic hemoglobin 4 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00023 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00023 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622932 ID=BQ622932; Name=BQ622932; organism=Citrus sinensis; type=EST; length=570bp
TGGCCACCGCCGCCCGCAGCTCTAGTTTTTTTTTTAATTTGTTCTTCAAA
TCTTTTTCCAAAACCTAAATCCGGCCAAGACGTGGCAATGGAAACAATAA
AAGAAACAGTTGAAACAGAGAATGAGATACGCTTGATTAGACGAAGAGGA
AGAGAAAGAAGCGTCACCATATGAGAACAGCAACGGCGGTGGGCCATCCT
CGTCTTCTTCATCCATGCCGACTTTAGCCACAATCAAAGAAGAAGAAGAA
AAAGAGGAAGGCGCTGTTGATGATGAACTTGTCGGTGGCGGATCGTTGCC
AAAGCCAATGGAAGGATTAAACGAGGTGGGTCTACCGCCGTTTTTGAGGA
AAATATATGAGATGGTGGAGGATCTGGAAACCGAACCGGTTGTTTCTTGG
ATCAACAGTGCAACTGAGGAAAGCAGGAAAAATGACAGTAAGAGAATCAA
CTCTAAAGAAATTAGGAGCTGTCCACTTCAAATCTGGTGTTGGTAATGAA
CATTTTGAGGGCACAAAATTTGCACTACTGGAAACAATAAAGGAAGCAGT
CCAGAGATATGGGCACCAAA
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