BQ622933

Overview
NameBQ622933
Unique NameBQ622933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622933_ssr567 microsatellite BQ622933_ssr567:567..578. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4037 contig Csv1_Contig4037:93..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: BRI1_ARATH (Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.836e-13
Identity = 48/136 (35.29%), Postives = 64/136 (47.06%), Query Frame = 3
Query:   30 LDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 437
            LD+S N +SG IP  +G M                          + ILNL  N + G+IPD  G       LDLS N L G IP ++S+   +  +DLS+N+L GPIP    F+    + F +N  LCG PL  C
Sbjct:  659 LDMSYNMLSGYIPKEIGSMPY------------------------LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 770          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: RCH1_ARATH (LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPD-VFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSN 404
            + ++ +L  LD+S+N ++G IPD LG +              G+IPS+L   T + +L+LS N + G IP+ +F  +   +AL+LS+N+L G IP  +S+   +  LD+SHN L G +   S  ++L + +   N
Sbjct:  535 LSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGDLSALSGLENLVSLNISHN 669          

HSP 2 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 43/118 (36.44%), Postives = 58/118 (49.15%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 356
            IG +  L+ LDLS N +SGP+P  +                 G +P +L S T + +L++S N L G IPD  G       L LS N+  G IP SL     +  LDLS N++ G IP
Sbjct:  487 IGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIP 604          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.132e-13
Identity = 47/146 (32.19%), Postives = 73/146 (50.00%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGI-LNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 437
            +G++++L  L LS N+ SG IP  +G +              G IP  L   + + I +NLS N   G IP   G+    M L L+ N+L G IP +  + + +   + S+N+L G +P    F ++  +SF  N  LCG  LR+C
Sbjct:  585 LGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNKGLCGGHLRSC 730          

HSP 2 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 45/120 (37.50%), Postives = 57/120 (47.50%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVG 362
            IGNM  L  L L  NQ++G IP  LGK+              G+IP  L   + + +L L +N L G IP+          LDLS N+L GPIP    +   +  L L HN L G IP G
Sbjct:  297 IGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQG 416          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.090e-13
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = 3
Query:   15 YRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXX-GKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 356
            +R+  L + + Q+SG IPD +G +               G+IP  +     + ++ LS   L G +P  F        LDLS+NNL GPIPGSLS    +G L L  NHL GPIP
Sbjct:   73 HRINSLTIFSGQLSGQIPDAVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLKMVRLSWTNLSGPVPAFFSELKNLTYLDLSFNNLSGPIPGSLSLLPNLGALHLDRNHLTGPIP 187          

HSP 2 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 51/163 (31.29%), Postives = 75/163 (46.01%), Query Frame = 3
Query:   21 LADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXX-GKIPSTLLSNTGMGILNLSRNALGGNIPDVFG----------SKSYFM-------------ALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 437
            L  L L  N ++GPIPD  GK                GKIP +        +++LSRN L G++   F           S++ F              +LDLS+N + G +P  + +S  +  L++S+N LCG IPVG      +  S+  N CLCG PL++C
Sbjct:  172 LGALHLDRNHLTGPIPDSFGKFAGSTPGLHLSHNQLSGKIPYSF-RGFDPNVMDLSRNKLEGDLSIFFNANKSTQIVDFSRNLFQFDLSRVEFPKSLTSLDLSHNKIAGSLP-EMMTSLDLQFLNVSYNRLCGKIPVGGKLQSFDYDSYFHNRCLCGAPLQSC 332          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 45/135 (33.33%), Postives = 67/135 (49.63%), Query Frame = 3
Query:   30 LDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRT 434
            L L  N +SGP P  L  +              G +PS L   T +  +++S N++ G+IP+  G+ S  + LDLS N L G IP S+S    +   ++S+N+L GP+P         +SSF  N  LCG  + T
Sbjct:  251 LSLDHNSLSGPFPFSLCNLTQLQDFSFSHNRIRGTLPSELSKLTKLRKMDISGNSVSGHIPETLGNISSLIHLDLSQNKLTGEIPISISDLESLNFFNVSYNNLSGPVPT-LLSQKFNSSSFVGNSLLCGYSVST 384          

HSP 2 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 51/147 (34.69%), Postives = 67/147 (45.58%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPI--PVGSPFDHLEASSFDSNDCLCGNPLRTC 437
            IG +  L  L L  N + G IP  LG +              G IP++L  +  +  L+LS N L   IP      S  + L+LS+N+L G IP SLS S+ +  L L HN+L GPI    GS   +L   S D N      P   C
Sbjct:  121 IGQLQALRKLSLHDNNLGGSIPMSLGLIPNLRGVQLFNNRLTGSIPASLGVSHFLQTLDLSNNLLSEIIPPNLADSSKLLRLNLSFNSLSGQIPVSLSRSSSLQFLALDHNNLSGPILDTWGSKSLNLRVLSLDHNSLSGPFPFSLC 267          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 52/169 (30.77%), Postives = 77/169 (45.56%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXX-GKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLS-----------------------YNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 437
            + ++ +L  L+LS N+++GPIP+  G                 G IP +L  N     ++LSRN L G+   +FG+K     +D+S                       +N + G IP   S  AY   L++S+N LCG IP G      ++ SF  N CLCG PL +C
Sbjct:  163 LSSLRKLEYLELSRNKLTGPIPESFGTFSGKVPSLFLSHNQLSGTIPKSL-GNPDFYRIDLSRNKLQGDASILFGAKKTTWIVDISRNMFQFDLSKVKLAKTLNNLDMNHNGITGSIPAEWSK-AYFQLLNVSYNRLCGRIPKGEYIQRFDSYSFFHNKCLCGAPLPSC 329          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: PSKR1_DAUCA (Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 37/89 (41.57%), Postives = 47/89 (52.81%), Query Frame = 3
Query:  171 ILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 437
            +LNL  N L GNIP      +    LDLS+NNL G IP SL   +++    +++N L GPIP G  F     SSF+ N  LCG     C
Sbjct:  561 VLNLKNNNLSGNIPANLSGMTSLEVLDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEHASPC 649          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 45/137 (32.85%), Postives = 65/137 (47.45%), Query Frame = 3
Query:   18 RLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPL 428
            R+  L L+ +++ GP+P  LGK+                IP++L + T +  + L  N + G IP   G+ S    LDLS NNL G IP SL     +   ++S+N L G IP       L   SF+ N  LCG  +
Sbjct:   74 RVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRLTKFNVSNNFLVGKIPSDGLLARLSRDSFNGNRNLCGKQI 210          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 50/130 (38.46%), Postives = 60/130 (46.15%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPG------------SLSSSAYIGHLDLSHNHLCGPIP 356
            IGN   L  L LS NQ++G IP  +GK+              GKIP  L   T +  L+L  N L G IPD   + +    L LSYNNL G IP              LS   + G  DLS+N L GPIP
Sbjct:  468 IGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIP 597          

HSP 2 Score: 73.1738 bits (178), Expect = 1.190e-12
Identity = 39/117 (33.33%), Postives = 61/117 (52.14%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPI 353
            +G    L ++ LS N +SG IP  L ++              G IP  + ++  +  LNL+ N L G+IP+ FG     + L+L+ N L GP+P SL +   + H+DLS N+L G +
Sbjct:  600 LGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGEL 716          

HSP 3 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 3
Query:   33 DLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 356
            DLS N++SGPIP+ LG+               G+IP++L   T + IL+LS NAL G+IP   G+      L+L+ N L G IP S      +  L+L+ N L GP+P
Sbjct:  586 DLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVP 693          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y3288_ARATH (Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 49/145 (33.79%), Postives = 66/145 (45.52%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRTC 437
            IGN+ +L  L L  N +SGPIP     +              G+IPS L +   +  +NL  N   G IPD   S +  + L L  N L GPIP     +  +   ++S N L G IP  S       ++F+ N  LCG PL TC
Sbjct:   86 IGNLTQLKTLSLRFNSLSGPIPSDFSNLVLLRYLYLQGNAFSGEIPSLLFTLPSIIRINLGENKFSGRIPDNVNSATRLVTLYLERNQLSGPIP---EITLPLQQFNVSSNQLNGSIP--SSLSSWPRTAFEGN-TLCGKPLDTC 224          
The following BLAST results are available for this feature:
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
BRI1_ARATH1.836e-1335.29Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidops... [more]
RCH1_ARATH2.398e-1333.33LRR receptor-like serine/threonine-protein kinase ... [more]
Y2317_ARATH3.132e-1332.19Probable leucine-rich repeat receptor-like protein... [more]
PGIP_VITVI4.090e-1337.39Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
IMK3_ARATH5.342e-1333.33Probable leucine-rich repeat receptor-like protein... [more]
PGIP2_ARATH6.976e-1330.77Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
PSKR1_DAUCA1.190e-1241.57Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR... [more]
FEI2_ARATH1.190e-1232.85LRR receptor-like serine/threonine-protein kinase ... [more]
EXS_ARATH1.190e-1238.46Leucine-rich repeat receptor protein kinase EXS OS... [more]
Y3288_ARATH2.030e-1233.79Probable inactive receptor kinase At3g02880 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00024 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00024 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622933 ID=BQ622933; Name=BQ622933; organism=Citrus sinensis; type=EST; length=611bp
CTATCGGGAACATGTATCGGCTTGCCGATTTGGATTTGTCCACGAATCAA
ATATCGGGTCCGATACCGGACATCTTGGGCAAAATGCTAGTCTTGTCAAC
TCTTAACTTGGATAGCAACTTGTTATCCGGTAAAATACCGTCCACGCTTC
TGAGTAATACCGGTATGGGAATCTTAAACTTGAGCCGAAATGCTCTAGGG
GGAAATATACCGGACGTTTTCGGGTCAAAATCCTACTTCATGGCTTTAGA
TTTGTCGTACAACAATTTGAAAGGTCCGATTCCCGGTTCGTTATCATCAT
CGGCATATATCGGGCACTTGGATTTGAGCCACAATCATCTCTGCGGACCC
ATTCCCGTCGGATCACCGTTCGATCACCTTGAAGCGTCGTCGTTCGACAG
CAACGATTGCTTGTGCGGCAACCCATTGAGGACTTGCTGATGTTATTGAT
TCCGATTATTGTGTCCGAAAAATCGGGTTAATTATTGGTTAGTTACATGT
TGTAATAGTGAATGTAAGCGTTTCTATGAATATGTTGTATGCTTATCATC
AGTTTATGGTATATATATTAATTAATTATATGCTTGAACTAAAAAAAAAA
AAAAAAAAAAA
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