BQ622933

Overview
NameBQ622933
Unique NameBQ622933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ622933_ssr567 microsatellite BQ622933_ssr567:567..578. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4037 contig Csv1_Contig4037:93..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  129 GKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLRT 434
            G IP  +     + IL L  N   G+IPD   + +    LDLS NNL G IP SL+   ++ + ++++N L GPIP G+ FD    ++F+ N  LCG  L T
Sbjct:  595 GTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLDLSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLLT 696          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y1571_ARATH (Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.651e-12
Identity = 47/141 (33.33%), Postives = 63/141 (44.68%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGS-----------------------KSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 356
            I NM +L +LDLSTN + G +P+ +G +              G++P+ L   T +  L+LS N     IP  F S                        +    LDLS+N L G IP  LSS   +  LDLSHN+L G IP
Sbjct:  578 IWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPRLSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIP 718          

HSP 2 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 46/134 (34.33%), Postives = 59/134 (44.03%), Query Frame = 3
Query:   21 LADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGN 422
            L  LDLS+N  S  IP                    G IP  L   T +  L+LS N L G IP    S      LDLS+NNL G IP +      + ++D+S+N L GP+P    F    A + + N  LC N
Sbjct:  632 LESLDLSSNNFSSEIPQTFDSFLKLHDMNLSRNKFDGSIPR-LSKLTQLTQLDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEENIGLCSN 764          

HSP 3 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 42/118 (35.59%), Postives = 58/118 (49.15%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 356
            +GN+  + DL+LS N+++G IP  LG +              G IP  L +   M  L L+ N L G+IP  FG+      L L  N L G IP  L +   + +LDLS N L G +P
Sbjct:  314 LGNIESMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVP 431          

HSP 4 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 39/118 (33.05%), Postives = 62/118 (52.54%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 356
            +GNM  + DL L+ N+++G IP   G +              G IP  L +   M  L+LS+N L G++PD FG+ +   +L L  N+L G IP  +++S+++  L L  N+  G  P
Sbjct:  362 LGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFP 479          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.462e-12
Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = 3
Query:   18 RLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCG 419
            R+  L+L+ ++I GP+P  +GK+              G IP+ L + T +  ++L  N   G IP   G       LD+S N L GPIP SL     + + ++S+N L G IP          +SF  N  LCG
Sbjct:   75 RVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGNCTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSNNFLVGQIPSDGVLSGFSKNSFIGNLNLCG 208          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y2579_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12
Identity = 51/163 (31.29%), Postives = 75/163 (46.01%), Query Frame = 3
Query:   18 RLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLC----GNPLRTC*CY*FRLLCPKNRVNYWLV 494
            RL  LDLS N+ISG +P  L                 G IP  L S   +  L+LS N   G IP  F        LDLS N L G IP +L +   +  +++SHN L G +P    F  + A++ + N  LC     + LR C     +++  ++  ++WL+
Sbjct:  479 RLKKLDLSRNKISGVVPQGLMTFPEIMDLDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEIPKNLGNIESLVQVNISHNLLHGSLPFTGAFLAINATAVEGNIDLCSENSASGLRPC-----KVVRKRSTKSWWLI 636          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 51/163 (31.29%), Postives = 73/163 (44.79%), Query Frame = 3
Query:    9 NMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGI---------------------LNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIG-HLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLR 431
            N   L  LDLS+N ISG IP  +G +              GK+P+ L S   + +                     L+LS N + G++P  FG  S    L++S+N + G IP  +  +      +DLS N+L GPIP    F + E++ F  N  LCG P R
Sbjct:  112 NARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSDNALAGKLPTNLASLRNLTVVSLENNYFSGEIPGGWRVVEFLDLSSNLINGSLPPDFGGYS-LQYLNVSFNQISGEIPPEIGVNFPRNVTVDLSFNNLTGPIPDSPVFLNQESNFFSGNPGLCGEPTR 273          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y1341_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 46/136 (33.82%), Postives = 64/136 (47.06%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGS-KSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSND 407
            +GN+  L  LDLS N  +G IP   G +              G+IP ++ +   + +L+LS N+L G IP   G   S  + LDLSYN   G IP + S    +  LDLS N L G I V      L + +   N+
Sbjct:  520 LGNLVNLEQLDLSRNSFTGNIPLSFGNLSYLNKLILNNNLLTGQIPKSIKNLQKLTLLDLSYNSLSGEIPQELGQVTSLTINLDLSYNTFTGNIPETFSDLTQLQSLDLSSNSLHGDIKVLGSLTSLASLNISCNN 655          

HSP 2 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 44/118 (37.29%), Postives = 59/118 (50.00%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 356
            IG +  L  LDL  N  SG +P  +  +              G IP+ L +   +  L+LSRN+  GNIP  FG+ SY   L L+ N L G IP S+ +   +  LDLS+N L G IP
Sbjct:  472 IGELQNLVFLDLYMNHFSGGLPYEISNITVLELLDVHNNYITGDIPAQLGNLVNLEQLDLSRNSFTGNIPLSFGNLSYLNKLILNNNLLTGQIPKSIKNLQKLTLLDLSYNSLSGEIP 589          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: EFR_ARATH (LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 41/118 (34.75%), Postives = 60/118 (50.85%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 356
            IGN+  L  L+L+ N     IP  +G++              G+IPS+L + + +  ++LS N LG  +P   GS S    LDLS NNL G  P SL +   +  LD ++N + G IP
Sbjct:   93 IGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEIP 210          

HSP 2 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 39/118 (33.05%), Postives = 57/118 (48.31%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 356
            IGN+  L +L L TN +SG +P   GK+              G+IPS   + T +  L+L+ N+  G IP   G   Y + L +  N L G IP  +     + ++DLS+N L G  P
Sbjct:  389 IGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFP 506          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: RCH2_ARATH (Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 45/135 (33.33%), Postives = 70/135 (51.85%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGS-KSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSN 404
            + ++  L  LD+S NQ SG IP  LG++              G IP++L   +G+ +L+L  N L G IP   G  ++  +AL+LS N L G IP  ++S   +  LDLSHN L G +   +  ++L + +   N
Sbjct:  534 VSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHNMLEGDLAPLANIENLVSLNISYN 668          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: Y3475_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIP 356
            IGN+  L  LDL  N   G IP  +G++              G IP  L + + +  L L  N LGG++P   GS +  + L+L  NN++G +P SL +   +  L LSHN+L G IP
Sbjct:   86 IGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIP 203          

HSP 2 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 3
Query:    3 IGNMYRLADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCG 419
            I  + +L  LD+S N + G +P  +G +              GK+P TL +   M  L L  N   G+IPD+ G       +DLS N+L G IP   +S + + +L+LS N+L G +PV   F++    S   N+ LCG
Sbjct:  477 IMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKGLVGV-KEVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCG 614          
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Match: IKU2_ARATH (Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 46/137 (33.58%), Postives = 68/137 (49.64%), Query Frame = 3
Query:   21 LADLDLSTNQISGPIPDILGKMXXXXXXXXXXXXXXGKIPSTLLSNTGMGILNLSRNALGGNIPDVFGSKSYFMALDLSYNNLKGPIPGSLSSSAYIGHLDLSHNHLCGPIPVGSPFDHLEASSFDSNDCLCGNPLR 431
            L  ++L  N+ SG +P+  GK+              G IP +L   T +  LN + N+L   IP+  GS     +L+LS N L G IP  L S+  +  LDLS+N L G +P     + L + SF+ N  LC + +R
Sbjct:  462 LVSVNLRMNKFSGIVPESFGKLKELSSLILDQNNLSGAIPKSLGLCTSLVDLNFAGNSLSEEIPESLGSLKLLNSLNLSGNKLSGMIPVGL-SALKLSLLDLSNNQLTGSVP-----ESLVSGSFEGNSGLCSSKIR 592          
The following BLAST results are available for this feature:
BLAST of BQ622933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PSYR1_ARATH2.030e-1238.24Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]
Y1571_ARATH2.651e-1233.33Probable leucine-rich repeat receptor-like protein... [more]
FEI1_ARATH3.462e-1232.09LRR receptor-like serine/threonine-protein kinase ... [more]
Y2579_ARATH4.522e-1231.29Probably inactive leucine-rich repeat receptor-lik... [more]
Y4372_ARATH5.906e-1231.29Probable LRR receptor-like serine/threonine-protei... [more]
Y1341_ARATH5.906e-1233.82Probable LRR receptor-like serine/threonine-protei... [more]
EFR_ARATH5.906e-1234.75LRR receptor-like serine/threonine-protein kinase ... [more]
RCH2_ARATH7.713e-1233.33Receptor-like protein kinase 2 OS=Arabidopsis thal... [more]
Y3475_ARATH1.007e-1135.59Probable LRR receptor-like serine/threonine-protei... [more]
IKU2_ARATH1.007e-1133.58Receptor-like protein kinase HAIKU2 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00024 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00024 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622933 ID=BQ622933; Name=BQ622933; organism=Citrus sinensis; type=EST; length=611bp
CTATCGGGAACATGTATCGGCTTGCCGATTTGGATTTGTCCACGAATCAA
ATATCGGGTCCGATACCGGACATCTTGGGCAAAATGCTAGTCTTGTCAAC
TCTTAACTTGGATAGCAACTTGTTATCCGGTAAAATACCGTCCACGCTTC
TGAGTAATACCGGTATGGGAATCTTAAACTTGAGCCGAAATGCTCTAGGG
GGAAATATACCGGACGTTTTCGGGTCAAAATCCTACTTCATGGCTTTAGA
TTTGTCGTACAACAATTTGAAAGGTCCGATTCCCGGTTCGTTATCATCAT
CGGCATATATCGGGCACTTGGATTTGAGCCACAATCATCTCTGCGGACCC
ATTCCCGTCGGATCACCGTTCGATCACCTTGAAGCGTCGTCGTTCGACAG
CAACGATTGCTTGTGCGGCAACCCATTGAGGACTTGCTGATGTTATTGAT
TCCGATTATTGTGTCCGAAAAATCGGGTTAATTATTGGTTAGTTACATGT
TGTAATAGTGAATGTAAGCGTTTCTATGAATATGTTGTATGCTTATCATC
AGTTTATGGTATATATATTAATTAATTATATGCTTGAACTAAAAAAAAAA
AAAAAAAAAAA
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