BQ622934

Overview
NameBQ622934
Unique NameBQ622934
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2066 contig Csv1_Contig2066:56..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.054e-15
Identity = 35/103 (33.98%), Postives = 58/103 (56.31%), Query Frame = 2
Query:  266 MGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARS 574
            + P +  Y GG F  ++ F   YP +PP V     ++HPNI+ +G+ICL++L+E WSP + +  V+L +  L  +PN  DPL  + A     D  ++E   ++
Sbjct:   65 ISPEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAADTMLRDPYRFETNVQA 167          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.033e-14
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 487
            A KR+ KE K + ++PP    A P  E++  W   I GPPD+PY GG +  T+ FP DYP+KPP +   T   +     N  +CL   D   + W+P  +++ +L  + S +T
Sbjct:    6 AQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATILNGLLSFMT 116          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 2
Query:  287 YAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 559
            YAGG +   +     YP +PP V    +++HPNI+ +G++CL++L+E W+PAL I  +++ I  L  +PN  DPL  + A     D  ++E
Sbjct:   72 YAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAKTLIEDPLRFE 162          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.761e-14
Identity = 45/112 (40.18%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  164 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 487
            KR+ KEL  LQ DPP   +     V   +  W   + G   + Y G  F +   F   YPF+ P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:    6 KRLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 41/131 (31.30%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKS 541
            A KR+ KE K + ++PP    A P  +++  W   I GP D+PY GG +  T+ FP DYP+KPP +   T   +     N  +CL   D   + W+P  ++S +L  + S +T        +    H  K+
Sbjct:    6 AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKPNTRLCLSMSDYHPDTWNPGWSVSTILNGLLSFMTSDEATTGSITTSDHQKKT 134          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 44/145 (30.34%), Postives = 70/145 (48.28%), Query Frame = 2
Query:  149 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARS 574
            S  A KR+ KE K + ++PP    A P  +++  W   I GPP++PY  G +  T+ FP DYPF PP +   T   +     N  +CL   D   + W+P+ +++ +L  + S +T           I  M  +D  K +  A+S
Sbjct:    3 SRQAYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMTTDE------SSIGTMESTDSTKRKYAAKS 139          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UB2J1_MOUSE (Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus GN=Ube2j1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSICSLL 484
            A KR++KE  +L KDP     A P+ +++F W  T+ GPPDS + GGV+   I  PP+YP KPP +   T   +        ICL I     E W P+ +I   LL+I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UB2J1_HUMAN (Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens GN=UBE2J1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.491e-13
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 2
Query:  158 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL---KEQWSPALTISKVLLSICSLL 484
            A KR++KE  +L KDP     A P+ +++F W  T+ GPPDS + GGV+   I  PP+YP KPP +   T   +        ICL I     E W P+ +I   LL+I   +
Sbjct:   11 AVKRLMKEAAEL-KDPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGVYHGRIVLPPEYPMKPPSIILLTA--NGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIGFM 119          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC34_ARATH (Ubiquitin carrier protein E2 34 OS=Arabidopsis thaliana GN=UBC34 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.948e-13
Identity = 38/115 (33.04%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  164 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 499
            KR+ KE + L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP+KPP +   T   +    +   ICL   D   E W+P  ++S +L  + S + D +P
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDTSP 120          
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Match: UBC33_ARATH (Probable ubiquitin carrier protein E2 33 OS=Arabidopsis thaliana GN=UBC33 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.322e-13
Identity = 38/115 (33.04%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  164 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLTDPNP 499
            KR+ KE + L K+P +   A P   D+  W   + G   +P+AGG +   I FPP+YP+KPP +   T   +    +   ICL   D   E W+P  ++S +L  + S + D +P
Sbjct:    8 KRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGFYYGKIKFPPEYPYKPPGITMTTP--NGRFVTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSP 120          
The following BLAST results are available for this feature:
BLAST of BQ622934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC12_ASHGO6.054e-1533.98NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBC6_CANGA1.033e-1435.40Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC12_KLULA1.349e-1436.26NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UBE2W_DANRE1.761e-1440.18Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
UBC6_YEAST1.491e-1331.30Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC6_ASHGO1.491e-1330.34Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UB2J1_MOUSE1.491e-1337.50Ubiquitin-conjugating enzyme E2 J1 OS=Mus musculus... [more]
UB2J1_HUMAN1.491e-1337.50Ubiquitin-conjugating enzyme E2 J1 OS=Homo sapiens... [more]
UBC34_ARATH1.948e-1333.04Ubiquitin carrier protein E2 34 OS=Arabidopsis tha... [more]
UBC33_ARATH3.322e-1333.04Probable ubiquitin carrier protein E2 33 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00025 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00025 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622934 ID=BQ622934; Name=BQ622934; organism=Citrus sinensis; type=EST; length=633bp
GAGAGGTCGGGACGGCCAGTAGCTGCCGCAGATCTGCTCCGAAGCCGTTC
CCCTTTCTCACTGCTATTGCCCTCCGATCTCCTTCTTCGCCGCACAAGTG
TTGCAGATCCTAGGTTTGTTGTAGCTTTAACTTTTAATAATCCGTTGAAG
CATCATGGCTTCGAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGG
ATCCTCCCACGTCTTGCAGCGCCGGTCCGGTGGCTGAAGACATGTTCCAC
TGGCAAGCAACAATTATGGGCCCCCCTGATAGTCCATATGCAGGAGGTGT
ATTTTTGGTTACCATTCATTTTCCTCCGGATTATCCCTTCAAGCCCCCAA
AGGTTGCTTTTAGGACCAAGGTCTTCCACCCAAACATCAACAGCAATGGA
AGCATATGTCTTGATATCCTTAAAGAACAGTGGAGCCCAGCTCTTACCAT
TTCAAAGGTCCTGCTTTCTATCTGCTCGTTGCTTACTGACCCAAATCCTG
ACGACCCGCTTGTACCGGAGATTGCTCACATGTACAAGTCCGACAAGGCC
AAATATGAAGCCACTGCCAGGAGCTGGACACAGAAGTATGCCATGGGATA
GTTGGTTTGGATATTGCAGAAATGGAACTCATT
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