BQ623088

Overview
NameBQ623088
Unique NameBQ623088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: CADA1_STAAU (Probable cadmium-transporting ATPase OS=Staphylococcus aureus GN=cadA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.534e-15
Identity = 57/195 (29.23%), Postives = 97/195 (49.74%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLP--SVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  A++  +   ++P  +V ++ F    GRG+   VNG      G  +L   L   DF        + + KI +    ++   G     L V      I + D  R    +VI +L      + +MLTGD++ +A  +   VG++++   L P+DKL+++K    +    + M+G+G+NDAPALAA+TVGI +
Sbjct:  455 HPLASAIMKKAEQDNIPYSNVQVEEFTSITGRGIKGIVNGTTYYI-GSPKLFKELNVSDFSLGF----ENNVKILQNQGKTAMIIGTEKTILGV------IAVADEVRETSKNVIQKLHQLGIKQTIMLTGDNQGTANAIGTHVGVSDIQSELMPQDKLDYIKKMQSEY-DNVAMIGDGVNDAPALAASTVGIAM 637          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATCS_SYNY3 (Cation-transporting ATPase pacS OS=Synechocystis sp. (strain PCC 6803) GN=pacS PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.534e-15
Identity = 60/193 (31.09%), Postives = 97/193 (50.26%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  AVV++   + +  + ID F+   G G+        +G   G+ ++  LG+ +++T L  +  E +  +         +  V       E   L+ + D  +P    V+  LK    L V MLTGD++++AQ +A+ VGI  V   ++P DK   V+   +  G  + MVG+GINDAPALA A VGI +
Sbjct:  470 HPLAEAVVNYGQSQQVSLLEIDNFQAIAGCGV--------AGQWQGQWIR--LGTSNWLTDLGVTGTEHQPWQSQAQQWEKEQKTVIWLAVDTEVKALLAIADAIKPSSPQVVQALKKLG-LSVYMLTGDNQATAQAIADTVGIRHVLAQVRPGDKAQQVEQL-QQKGNIVAMVGDGINDAPALAQADVGIAI 650          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ZOSA_BACSU (Zinc-transporting ATPase OS=Bacillus subtilis GN=zosA PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 56/196 (28.57%), Postives = 95/196 (48.47%), Query Frame = 1
Query:    4 TTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            ++HP+ +A+  ++  + +        E   G G+ A V+G           K  +G   FI      E+ + +  +   +     G     +  ++++   I L+D+ RP   +V+ EL +   ++  MLTGDHE +AQ +A   G+  V     P+ K+N +K    +  G + MVG+GINDAPAL AA VGI +
Sbjct:  374 SSHPLAQAITAYAESRGVNQSGYISIEETSGFGVMAEVSGA----------KWKVGKAGFI-----GEEMAAQFMKQTASDVIQSGHTIVFVKKDDQIAGCIALKDQIRPEAKEVMEEL-NRLGIKTAMLTGDHEDTAQAIAKEAGMTTVVAECLPDQKVNEIKRLKEEF-GTIAMVGDGINDAPALKAADVGIAM 552          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATCU_SINMW (Copper-transporting P-type ATPase OS=Sinorhizobium medicae (strain WSM419) GN=actP PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 61/194 (31.44%), Postives = 98/194 (50.52%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHAR-LRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HPI  A+V  +  + + +V++  FE  PG G++ TV+G        + L  +   +D IT             EA    S G+  ++AA+       ++ + D  +      I  L  HA  L+V M+TGD+  +A+ +A  +GI+EV   + PE K++ V+   R  G  +  +G+GINDAPALA A VGI +
Sbjct:  554 HPIAEAIVSAAKSRGIATVAVSAFEATPGFGVSGTVSGRRVLVGADRALVKN--GID-ITGFAD---------EAERLGSGGKSPLYAAID-GRLAAIVAVSDPVKESTPQAIKSL--HALGLKVAMVTGDNRRTAEAIAKKLGIDEVVAEVLPEGKVDAVRKL-RQGGRSVAFIGDGINDAPALAEADVGIAV 731          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: CTPA_MYCLE (Cation-transporting P-type ATPase A OS=Mycobacterium leprae GN=ctpA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15
Identity = 56/175 (32.00%), Postives = 87/175 (49.71%), Query Frame = 1
Query:   70 IDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQ 594
            +  F   PG G++ TV           E    +G   +I S C S   +  +    NA   G   V   +   E+  +I + D  +   +D +A L D    R  +LTGD+ +SA  VA+ +GI+EV   + PEDK++ ++   RD G  + MVG+GIND PALA A +G+ + +
Sbjct:  485 VANFRAVPGHGVSGTV----------AERAVRVGKPSWIASRCNS---TTLVTARRNAELRGETAVFVEID-GEQCGVIAVADAVKASAADAVAALHDRG-FRTALLTGDNPASAAAVASRIGIDEVIADILPEDKVDVIEQL-RDRGHVVAMVGDGINDGPALARADLGMAIGR 643          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: CTPC_MYCLE (Probable cation-transporting P-type ATPase C OS=Mycobacterium leprae GN=ctpC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.373e-15
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  295 VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            V LI L D  RP  ++V+ +L+     R++MLTGDH   A+ VA  +GI+E    + PEDKL  V+    + G  + MVG+G+NDAPALAAA +GI +
Sbjct:  539 VGLISLRDEVRPEAAEVLTKLRASGVRRIVMLTGDHPDIAKAVATELGIDEWRAEVMPEDKLKVVRDLQNE-GYVVGMVGDGVNDAPALAAADIGIAM 635          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_HELPJ (Copper-transporting ATPase OS=Helicobacter pylori J99 GN=copA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.373e-15
Identity = 56/199 (28.14%), Postives = 105/199 (52.76%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEK----VTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQ 594
            H I + +V+++  ++ P   I   +   G G++A V+      +G KE+   +G+ +F   +   E +   I             V    ++NEK    +    LED P+ GV + IA++K+   +   +L+GD+  + ++ A  +GI+    + KP+DKLN +K   ++ G  ++MVG+G+NDAP+LA + V +V+A+
Sbjct:  472 HVIAKGIVEYAKERNAPLKDISEVKVKTGFGISAKVD-----YQGAKEI-IKVGNSEFFNPINTLEIKENGI------------LVFVGRAINEKEDELLGAFVLEDLPKKGVKEHIAQIKNLG-INTFLLSGDNRENVKKCALELGIDGYISNAKPQDKLNKIKEL-KEKGRIVMMVGDGLNDAPSLAMSDVAVVMAK 650          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: CADA_BACPF (Probable cadmium-transporting ATPase OS=Bacillus pseudofirmus GN=cadA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.373e-15
Identity = 51/195 (26.15%), Postives = 95/195 (48.72%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLP--SVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  A++  +  +++    V ++ F    G+G+   VNG              +GS      L  ++ +    +      + G+  +       E + +I + D  R    +++ +L      + +MLTGD++ +A  +   VG++++   L P+DKL+ +K   R   G + MVG+G+NDAPALAA+TVGI +
Sbjct:  452 HPLASAIMKKAEEENITYSDVQVEDFSSITGKGIKGIVNGTTY----------YIGSPKLFKELLTNDFDKDLEQNVTTLQNQGKTAMIIGTE-KEILAVIAVADEVRESSKEILQKLHQLGIKKTIMLTGDNKGTANAIGGQVGVSDIEAELMPQDKLDFIKQL-RSEYGNVAMVGDGVNDAPALAASTVGIAM 634          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPB_ARCFU (Probable copper-exporting P-type ATPase B OS=Archaeoglobus fulgidus GN=copB PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.629e-15
Identity = 62/194 (31.96%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDES-RKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HPI  A+V+ +  +      ++ F   PG+G+   VNG           +  + S  +I  L    DES  K+K+       G+  V   L   E   +I L DR RP   + I++LK    ++ MMLTGD+   A+ VA  +G+++ +  + P +K   VK   +       MVG+G+NDAPALA A VGI +
Sbjct:  427 HPIAAAIVEEAEKRGFGLTEVEEFRAIPGKGVEGIVNG----------RRYMVVSPGYIRELGIKTDESVEKLKQQ------GKTVVFI-LKNGEVSGVIALADRIRPESREAISKLKAIG-IKCMMLTGDNRFVAKWVAEELGLDDYFAEVLPHEKAEKVKEVQQKYVTA--MVGDGVNDAPALAQADVGIAI 600          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_STAAR (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain MRSA252) GN=copA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 61/195 (31.28%), Postives = 99/195 (50.77%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGR-GFVHAALSVNEKVT-LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+  A+V+++  K L       F+  PG G+ AT++       G ++L A     D   SL K   +        + + Y R G     ++VN  +T +I + D  +    D I +L D   + V MLTGD++++AQ +A  VGI+ V   + PE+K   + +  +  G  + MVG+G+NDAPAL  A +GI +
Sbjct:  529 HPLAEAIVNYAKEKQLTLTETTTFKAVPGHGIEATIDHHHI-LVGNRKLMA-----DNDISLPKHISD--------DLTHYERDGKTAMLIAVNYSLTGIIAVADTVKDHAKDAIKQLHDMG-IEVAMLTGDNKNTAQAIAKQVGIDTVIADILPEEKAAQI-TKLQQQGKKVAMVGDGVNDAPALVKADIGIAI 707          
The following BLAST results are available for this feature:
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
CADA1_STAAU2.534e-1529.23Probable cadmium-transporting ATPase OS=Staphyloco... [more]
ATCS_SYNY32.534e-1531.09Cation-transporting ATPase pacS OS=Synechocystis s... [more]
ZOSA_BACSU4.322e-1528.57Zinc-transporting ATPase OS=Bacillus subtilis GN=z... [more]
ATCU_SINMW4.322e-1531.44Copper-transporting P-type ATPase OS=Sinorhizobium... [more]
CTPA_MYCLE5.645e-1532.00Cation-transporting P-type ATPase A OS=Mycobacteri... [more]
CTPC_MYCLE7.373e-1544.90Probable cation-transporting P-type ATPase C OS=My... [more]
COPA_HELPJ7.373e-1528.14Copper-transporting ATPase OS=Helicobacter pylori ... [more]
CADA_BACPF7.373e-1526.15Probable cadmium-transporting ATPase OS=Bacillus p... [more]
COPB_ARCFU9.629e-1531.96Probable copper-exporting P-type ATPase B OS=Archa... [more]
COPA_STAAR1.258e-1431.28Copper-exporting P-type ATPase A OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00179 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00179 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623088 ID=BQ623088; Name=BQ623088; organism=Citrus sinensis; type=EST; length=608bp
GGTACTACCCACCCTATTGGAAGAGCTGTGGTTGACCATAGTATAGGCAA
GGACCTTCCTTCTGTATCAATTGACCGTTTTGAGTATTTTCCTGGTCGAG
GTCTCACAGCAACTGTAAATGGCATTGAGTCAGGAACTGAAGGGGGTAAA
GAATTGAAAGCATCTCTGGGTTCTGTAGATTTTATAACTTCTCTCTGTAA
ATCTGAAGATGAATCAAGAAAGATCAAGGAAGCTGTGAATGCTTCTTCTT
ATGGAAGGGGCTTTGTTCATGCTGCTCTTTCTGTTAATGAAAAGGTAACA
TTGATTCACCTCGAGGATAGGCCTCGCCCAGGAGTTTCAGATGTTATAGC
AGAATTAAAAGATCATGCAAGATTACGTGTGATGATGTTAACTGGTGACC
ATGAGTCTAGTGCGCAGAGAGTAGCAAATGCTGTTGGCATCAATGAAGTT
TACTGCAGCCTGAAGCCTGAGGATAAGCTCAATCATGTGAAGAGTACCTC
CAGGGATATGGGAGGAGGTTTGATCATGGTTGGTGAAGGCATTAATGATG
CGCCAGCACTCGCAGCTGCAACTGTGGGAATTGTTCTTGCTCAACGGGCT
AGTGCAAC
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