BQ623088

Overview
NameBQ623088
Unique NameBQ623088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPA_YERPE (Copper-exporting P-type ATPase A OS=Yersinia pestis GN=copA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 59/199 (29.65%), Postives = 93/199 (46.73%), Query Frame = 1
Query:    1 GTTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEK-VTLIHLEDRPRPGVSDVIAELKDHARL--RVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            G+ HP+ RA++  + G  L + S  +F    G G++  V+GI       + L+        + SL + + ES              G     L+ N K   L+ + D  R    D I  L+   +L   ++MLTGD+  +A  +A   GI+ V   + P+ K + +K      G  + M+G+GINDAPALA A VGI +
Sbjct:  686 GSNHPLARAILQRAEGLTLATAS--QFRTLRGLGVSGEVDGIPLLLGNNRLLEEQQIDTRELQSLIQQQAES--------------GATPVILTANGKPAALLSIRDPLR---EDSIGALQRLHQLGYSLVMLTGDNPITANAIAKEAGIDRVIAGVLPDGKADAIKQLQA-AGHKVAMIGDGINDAPALAQADVGIAM 864          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_HYDS0 (Potassium-transporting ATPase B chain OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=kdpB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 1
Query:  301 LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            +++L+D  +PG+     EL+  A ++ +M+TGD+  +A  +A   G+++     KPEDKL H+K    + G  + M G+G NDAPALA A V + +
Sbjct:  443 VVYLKDIIKPGIKKKFRELR-RAGIKTVMITGDNPLTAATIAAEAGVDDFLAQAKPEDKLRHIKKYQEE-GYMVAMTGDGTNDAPALAQADVAVAM 536          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_THEAC (Potassium-transporting ATPase B chain OS=Thermoplasma acidophilum GN=kdpB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 39/96 (40.62%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  301 LIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            +I L+D  +PG+ + IAE+K+   ++ +M TGD E +AQ ++  VG++E   + KP DK N V    ++    + MVG+G NDAPALA A VG+ +
Sbjct:  425 VIELQDLIKPGIKERIAEIKN-MDIKTVMCTGDDEVTAQYISAQVGLDEYIANSKPIDKYN-VVIREKERQRMVAMVGDGTNDAPALAKADVGLAM 518          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_CLOAB (Potassium-transporting ATPase B chain OS=Clostridium acetobutylicum GN=kdpB PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 58/202 (28.71%), Postives = 98/202 (48.51%), Query Frame = 1
Query:   13 PIGRAVVDHSIGKDLPSVSID--RFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDE--SRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRASA 606
            P G+++V+  +GK L  ++ID  ++E       TA         E G  +K   G+ D I    +       + + EAVN  +   G        N+   +I+L+D  +PG+ +    L++   ++ +M TGD+  +A  +A   G++      KPEDK+  +K   +D G  + M G+G NDAPALA A VG+ +    +A
Sbjct:  346 PEGKSIVE--LGKQL-GITIDTKKYESIEFEEFTAQTRMSGIKLENGTAVKK--GAYDAIKKRVQELKGVIPKDLDEAVNKVAKLGGTPLVVCVDNKIYGVIYLKDTVKPGLVERFERLREIG-IKTIMCTGDNPLTAATIAKEAGVDGFIAECKPEDKIEAIKK-EQDEGKLVAMTGDGTNDAPALAQADVGLAMNSGTTA 540          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: COPB_STAEQ (Probable copper-transporting P-type ATPase B OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=copB PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 52/195 (26.67%), Postives = 93/195 (47.69%), Query Frame = 1
Query:    4 TTHPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            + HP+  ++VD +  K++   +       PG GL   ++         K  K +  +V ++       D    IK A   +S     +   +   + + +I   D+ +     ++A+L     +  +MLTGD+   A  VA  +GI++V+  L PEDK + +K    + G  ++MVG+GINDAP+L  A +GI +
Sbjct:  405 SNHPLAISIVDFAKSKNVSFTNPQDVNNIPGVGLEGLIHN--------KTYKIT--NVSYLDQHGFEYDNDLFIKLAQQGNS-----ISYLIEDQQVIGMIAQGDQIKESSKQMVADLLSR-NITPVMLTGDNNEVAHAVAKELGISDVHAQLMPEDKESIIKDYQSN-GNKVMMVGDGINDAPSLIRADIGIAI 582          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: AHM7_ARATH (Putative copper-transporting ATPase 3 OS=Arabidopsis thaliana GN=HMA5 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 57/199 (28.64%), Postives = 98/199 (49.25%), Query Frame = 1
Query:   10 HPIGRAVVDHSI----GKDLPS-VSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVN-EKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            HP+ +A+V+++      ++ P+      F    G+G+ ATV G E    G K L            +   +D    + ++ + +  G       +S+N E + ++ + D  +P   + I+ LK    ++ +M+TGD+  +A  +A  VGI+ V    KPE K   VK   +  G  + MVG+GIND+PAL AA VG+ +
Sbjct:  700 HPLAKAIVEYAKKFRDDEENPAWPEACDFVSITGKGVKATVKGREIMV-GNKNLMND-------HKVIIPDDAEELLADSEDMAQTG-----ILVSINSELIGVLSVSDPLKPSAREAISILKS-MNIKSIMVTGDNWGTANSIAREVGIDSVIAEAKPEQKAEKVKEL-QAAGHVVAMVGDGINDSPALVAADVGMAI 883          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: CTPD_MYCTU (Probable cation-transporting P-type ATPase D OS=Mycobacterium tuberculosis GN=ctpD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 54/199 (27.14%), Postives = 88/199 (44.22%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTL--IHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRA 600
            HP+GRA+V  +  + +       F   PG G+ A V                    DF+            + E     S G     AA+ + + V +  + L D+ RP   + +A +        ++LTGD+  +A RVA   GI +V  +L PE K+  V++     G  +++VG+G+NDAPA+AAA   + +   A
Sbjct:  388 HPLGRAIVAEARRRGIAIPPAKDFRAVPGCGVHALVGN------------------DFVEIASPQSYRGAPLAELAPLLSAG---ATAAIVLLDGVAIGVLGLTDQLRPDAVESVAAMAALTAAPPVLLTGDNGRAAWRVARNAGITDVRAALLPEQKVEVVRNLQAG-GHQVLLVGDGVNDAPAMAAARAAVAMGAGA 564          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: CTPD_MYCBO (Probable cation-transporting P-type ATPase D OS=Mycobacterium bovis GN=ctpD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 54/199 (27.14%), Postives = 88/199 (44.22%), Query Frame = 1
Query:   10 HPIGRAVVDHSIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFITSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTL--IHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVLAQRA 600
            HP+GRA+V  +  + +       F   PG G+ A V                    DF+            + E     S G     AA+ + + V +  + L D+ RP   + +A +        ++LTGD+  +A RVA   GI +V  +L PE K+  V++     G  +++VG+G+NDAPA+AAA   + +   A
Sbjct:  388 HPLGRAIVAEARRRGIAIPPAKDFRAVPGCGVHALVGN------------------DFVEIASPQSYRGAPLAELAPLLSAG---ATAAIVLLDGVAIGVLGLTDQLRPDAVESVAAMAALTAAPPVLLTGDNGRAAWRVARNAGITDVRAALLPEQKVEVVRNLQAG-GHQVLLVGDGVNDAPAMAAARAAVAMGAGA 564          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATU2_SCHPO (Copper-transporting ATPase ccc2 OS=Schizosaccharomyces pombe GN=ccc2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 58/196 (29.59%), Postives = 97/196 (49.49%), Query Frame = 1
Query:   10 HPIGRAVVDH-SIGKDLPSVSIDRFEYFPGRGLTATVNGIESGTEGGKELKASLGSVDFI--TSLCKSEDESRKIKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGIN--EVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGI 582
            HPIG+A+ +  S   D+  + I+ F   PG G+   +   E      +   A LG+   +   ++   +D   K+K +   SS G   V  A+   + V  +   D+ RP     ++ LK   + +V +LTGD +++A+RVA  + I+  +VY    P  K   ++   +D    + MVG+GIND+P+L  A VGI
Sbjct:  574 HPIGKAITEKASEFTDVSEIGIESFNAVPGEGVDVVLRWKE------RTFHALLGNSLLLEHNNVSIPDDFDSKLKLS---SSSGLTCVRIAID-GQFVGFLGCMDQVRPDSYQTVSALKQLGK-KVCLLTGDQKATARRVAQGLEIDFSDVYAEAVPSQKAEIIQKL-KDQKHCVAMVGDGINDSPSLVLADVGI 757          
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Match: ATKB_SYNY3 (Potassium-transporting ATPase B chain OS=Synechocystis sp. (strain PCC 6803) GN=kdpB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  130 SGTEGGKELKASLGSVDFITSLCKSEDESRK--IKEAVNASSYGRGFVHAALSVNEKVTLIHLEDRPRPGVSDVIAELKDHARLRVMMLTGDHESSAQRVANAVGINEVYCSLKPEDKLNHVKSTSRDMGGGLIMVGEGINDAPALAAATVGIVL 588
            SGT+     +   G+VD I    +S        + EA    S+  G   A    +E   +I+L+D  +PG+ +   +L+    +R +MLTGD+  +A  +A   G+++      PEDK+  ++   +  G  + M G+G NDAPALA A VG+ +
Sbjct:  396 SGTDLPDGSEVRKGAVDAIRGFVRSRGGKSPTGLDEAYGKVSHLGGTPLAVCRNDEIYGVIYLKDIIKPGIQERFNQLR-RMGVRTVMLTGDNRITASVIAKEAGVDDFIAEATPEDKIQVIQQ-EQAAGKLVAMTGDGTNDAPALAQANVGLAM 548          
The following BLAST results are available for this feature:
BLAST of BQ623088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
COPA_YERPE1.301e-1129.65Copper-exporting P-type ATPase A OS=Yersinia pesti... [more]
ATKB_HYDS01.301e-1136.46Potassium-transporting ATPase B chain OS=Hydrogeno... [more]
ATKB_THEAC1.700e-1140.63Potassium-transporting ATPase B chain OS=Thermopla... [more]
ATKB_CLOAB2.220e-1128.71Potassium-transporting ATPase B chain OS=Clostridi... [more]
COPB_STAEQ2.899e-1126.67Probable copper-transporting P-type ATPase B OS=St... [more]
AHM7_ARATH4.945e-1128.64Putative copper-transporting ATPase 3 OS=Arabidops... [more]
CTPD_MYCTU6.459e-1127.14Probable cation-transporting P-type ATPase D OS=My... [more]
CTPD_MYCBO6.459e-1127.14Probable cation-transporting P-type ATPase D OS=My... [more]
ATU2_SCHPO6.459e-1129.59Copper-transporting ATPase ccc2 OS=Schizosaccharom... [more]
ATKB_SYNY36.459e-1130.32Potassium-transporting ATPase B chain OS=Synechocy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00179 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00179 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623088 ID=BQ623088; Name=BQ623088; organism=Citrus sinensis; type=EST; length=608bp
GGTACTACCCACCCTATTGGAAGAGCTGTGGTTGACCATAGTATAGGCAA
GGACCTTCCTTCTGTATCAATTGACCGTTTTGAGTATTTTCCTGGTCGAG
GTCTCACAGCAACTGTAAATGGCATTGAGTCAGGAACTGAAGGGGGTAAA
GAATTGAAAGCATCTCTGGGTTCTGTAGATTTTATAACTTCTCTCTGTAA
ATCTGAAGATGAATCAAGAAAGATCAAGGAAGCTGTGAATGCTTCTTCTT
ATGGAAGGGGCTTTGTTCATGCTGCTCTTTCTGTTAATGAAAAGGTAACA
TTGATTCACCTCGAGGATAGGCCTCGCCCAGGAGTTTCAGATGTTATAGC
AGAATTAAAAGATCATGCAAGATTACGTGTGATGATGTTAACTGGTGACC
ATGAGTCTAGTGCGCAGAGAGTAGCAAATGCTGTTGGCATCAATGAAGTT
TACTGCAGCCTGAAGCCTGAGGATAAGCTCAATCATGTGAAGAGTACCTC
CAGGGATATGGGAGGAGGTTTGATCATGGTTGGTGAAGGCATTAATGATG
CGCCAGCACTCGCAGCTGCAACTGTGGGAATTGTTCTTGCTCAACGGGCT
AGTGCAAC
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