BQ623100

Overview
NameBQ623100
Unique NameBQ623100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3659 contig Csv1_Contig3659:336..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.096e-16
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDF 204
            K I +++E +DT+D +K +++++EGIPP QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG+F
Sbjct:   11 KEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGGNF 78          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: RUB2_ARATH (NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN=RUB2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.738e-16
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY I+  S LHLVL LRGG
Sbjct:   11 KEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYAIEGGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: NEDD8_CAEEL (NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.738e-16
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I L++E +D ++ +K K+++KEGIPP QQRLIFAGKQ+ D +T ADY +   S LHLVL LRGG
Sbjct:   11 KEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.953e-15
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.953e-15
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.953e-15
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.953e-15
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.953e-15
Identity = 35/66 (53.03%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +++E +D ++ +K ++++KEGIPP QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:   11 KEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.150e-14
Identity = 35/66 (53.03%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I +E+E +DTI+ +K +I++KEGIPP  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:   11 KQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 7.456e-14
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 198
            K I ++++ +D I  +K ++++KEGIPP QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:   11 KEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
The following BLAST results are available for this feature:
BLAST of BQ623100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RUB3_ORYSJ2.096e-1654.41NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RUB2_ARATH2.738e-1659.09NEDD8-like protein RUB2 OS=Arabidopsis thaliana GN... [more]
NEDD8_CAEEL2.738e-1657.58NEDD8 OS=Caenorhabditis elegans GN=ned-8 PE=1 SV=1[more]
NEDD8_RAT3.953e-1553.03NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT3.953e-1553.03NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE3.953e-1553.03NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN3.953e-1553.03NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN3.953e-1553.03NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RUB3_ARATH1.150e-1453.03NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_DICDI7.456e-1450.00NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00191 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00191 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623100 ID=BQ623100; Name=BQ623100; organism=Citrus sinensis; type=EST; length=465bp
AAGACGATCACCCTGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAA
GGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCAGCAGAGGCTCA
TCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAAC
ATTCAAAAGGAGTCCACTCTCCACCTTGTCCTCCGTCTCCGTGGTGGTGA
CTTCTAAAAAAATAAATGTGGATGTGTCCGCGTTTGATTGGATGGCGCTA
ATAATAATTAATTAGGTTGGATTGGGCGCTTTGCTTTAATTATTTTGTAA
TTACAATTGTGTAATGGCCAGCCGCTTGGGCCTAATTTCCTCTTTCTATT
GGTAATAATAATATAAGCACTAGTTTTTAAAAAAAAAAAAAAAAAAAAAA
AACTCTCGAAGCGCCTGCTGTCCTTGTTGTCCCCATCCATTCTGACCTTC
AAGCTTATTCAGCAT
back to top