BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_GEOSW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus sp. (strain WCH70) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.131e-33
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FR+G GFD+H+L  G PLIIGG+ +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+D  +K A S++ +K+   L+ + GYE+ NLD T+I Q+PK++P+ E ++ N++ LL  +    N+KA T
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGVRIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGKHFPDTDECYKDADSALLLKQVWELVKQQGYELANLDCTIIAQKPKMAPHIEQMKENIANLLEGELSQVNVKATT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CLOD6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Clostridium difficile (strain 630) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.131e-33
Identity = 63/132 (47.73%), Postives = 95/132 (71.97%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G G+D+H+L     LIIGG+ +PH++G   HSD DVL+H ++D+ILGAL L DIG+ FPD+D ++KGA S   ++    L+   GY+IGN+D+T+I Q PK++PY E++R+N+S++L  D    N+KA T
Sbjct:    2 RIGLGYDVHKLTEDRKLIIGGVEIPHDKGLLGHSDADVLIHAIMDSILGALALGDIGKHFPDTDEEYKGADSMKLLEHVYNLITSKGYKIGNIDSTIIAQSPKMAPYIESMRSNISKVLNTDIDNINIKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BACLD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.701e-33
Identity = 67/133 (50.38%), Postives = 93/133 (69.92%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FR+G GFD+H+L  G PLIIGGI +P+E+G   HSD DVLLH + DA LGA+G  DIG+ FPD+DP++K A S   ++    ++ E GY +GNLD T+I Q+PK++PY E +R  ++E L A+    N+KA T
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGITIPYEKGLLGHSDADVLLHTIADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLRHVWMIVKEKGYTLGNLDCTIIAQKPKMAPYIEDMRARIAEGLEAEISQINVKATT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_SALRD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinibacter ruber (strain DSM 13855) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.752e-33
Identity = 65/132 (49.24%), Postives = 88/132 (66.67%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G G+D+HRL  G PLI+GG+ VPH+RG   HSD DVLLH V DA+LGA  L D+G  FPD+D KWK A S   ++  V  +  AGY   N+DAT++L+RPKL P+ + +RTN++  L       ++KA T
Sbjct:    2 RIGFGYDVHRLVEGRPLILGGVQVPHDRGLAGHSDADVLLHAVADALLGAAALGDLGAHFPDTDAKWKDADSQALLRRVVERVQHAGYAPHNVDATVLLERPKLRPHVDEMRTNIARALSFPRDAVSVKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PROMH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Proteus mirabilis (strain HI4320) GN=ispF PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.752e-33
Identity = 66/132 (50.00%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHG+D+H+     P+IIGG+ +P+E+G  AHSDGDV+LH V DAILGA+ + DIG +FPD+DP +KGA S V ++EA   +   GY IGNLD T+I Q PK+ P+   +R N++E L       N+KA T
Sbjct:    2 RIGHGYDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVVLHAVTDAILGAVAMGDIGTLFPDTDPAYKGADSRVLLREAFSRVMAKGYRIGNLDVTIIAQAPKMLPHTPQMRVNIAEDLHCHVDDINVKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_DINSH (Bifunctional enzyme ispD/ispF OS=Dinoroseobacter shibae (strain DFL 12) GN=ispDF PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.752e-33
Identity = 65/135 (48.15%), Postives = 89/135 (65.93%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +  R G+G+D+HR   G  +I+ G+ VPH+R    HSD DV +H V DAI GALG  DIGQ FP SDP+WKGA S +F++ AV L  E GY I ++D TL+ +RPK+ PY   ++  +SEL+G  P   ++KA T
Sbjct:  242 MDIRTGNGYDVHRFGTGDAVILCGVEVPHDRALMGHSDADVGMHAVTDAIYGALGDGDIGQHFPPSDPQWKGAASEIFLRHAVALAAERGYTITHMDCTLVCERPKIGPYHAVMKAKMSELMGLQPDQVSVKATT 376          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PSEPW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain W619) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.143e-32
Identity = 64/132 (48.48%), Postives = 95/132 (71.97%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA GL DIG+ FPD+DP++KGA S V ++  V ++   G+++GN+DAT++ Q PK+SP+ ET+R  ++E L  +    N+KA T
Sbjct:    2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAGLGDIGKHFPDTDPQFKGADSRVLLRHVVGIVQAKGWKVGNVDATIVAQAPKMSPHIETMRQRIAEDLQVELDQVNVKATT 133          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PORG3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.143e-32
Identity = 63/134 (47.01%), Postives = 92/134 (68.66%), Query Frame = 3
Query:  240 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            PFR+G GFD+HRL  GYPL +GG+ + H +G E HSD DVL+H + DA+LGA  L DIG  FP SDP++KG  S + +  A+ L+   GYE+GN+DAT+  ++PKL+P+   ++  L+E++  +    +LKA T
Sbjct:    4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARAMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATT 137          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_HAHCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.143e-32
Identity = 64/134 (47.76%), Postives = 92/134 (68.66%), Query Frame = 3
Query:  243 FRVGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FR+GHGFD+H   E G  ++IGG+N+PHERG +AHSDGDVLLH + DA+LGA    DIG+ FPD+DP + GA S   ++  V  + + GY+IGN+D T++ Q PK++P+ E++R N++          N+KA T
Sbjct:    4 FRIGHGFDVHAFSETGDLIVIGGVNIPHERGLQAHSDGDVLLHAICDALLGAAAFGDIGKHFPDTDPSFSGADSRNLLRSVVSKLHQKGYKIGNIDGTIVAQAPKMAPHIESMRVNIASDCNVSIDCINVKATT 137          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_GEOUR (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter uraniireducens (strain Rf4) GN=ispF PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.143e-32
Identity = 67/132 (50.76%), Postives = 91/132 (68.94%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHG+D+H+L     LI+GG+++P+ERG   HSD DVLLH + DAILGA+G  DIG+ FPD+DP +KGA S   +   + L    GY IGNLDAT++ QRPKL+P+   +R N++  L AD    N+KA T
Sbjct:    2 RIGHGYDVHKLVENRKLILGGVDIPYERGLLGHSDADVLLHAISDAILGAIGEGDIGKHFPDTDPAYKGADSIKLLMHVMALAVGKGYAIGNLDATIVAQRPKLAPHIPQMRENIARALKADADRINVKATT 133          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_GEOSW5.131e-3348.872-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CLOD65.131e-3347.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACLD6.701e-3350.382-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALRD8.752e-3349.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROMH8.752e-3350.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_DINSH8.752e-3348.15Bifunctional enzyme ispD/ispF OS=Dinoroseobacter s... [more]
ISPF_PSEPW1.143e-3248.482-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PORG31.143e-3247.012-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HAHCH1.143e-3247.762-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOUR1.143e-3250.762-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
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