BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CORU7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG   D H++EPG P  + G+      GCE HSDGDV+ H +VDA+L A GL D+G        ++ G      I E  +L+ E G+ IGN+ A +I  RPK+ P +E     L+EL+GA
Sbjct:    8 RVGIASDAHQVEPGKPCWMAGLLFEDADGCEGHSDGDVVSHVIVDALLSASGLGDLGSFVGVGRKEYDGVSGERLITECRQLLAENGFTIGNVAAQMIGNRPKMGPRREEAERRLTELVGA 128          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPDF_CLAM3 (Bifunctional enzyme ispD/ispF OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=ispDF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            R G G D+H ++   PL + G++ P E G   HSDGD + H + DA+L A GL DIG IF   DP+  GA   VF++    L+ +AGY I N+   ++  RPKLSP +      LS  +GA
Sbjct:  258 RSGIGTDVHAVDASQPLWLAGLHWPGEAGLAGHSDGDAVSHAMCDALLSAAGLGDIGGIFGTDDPELDGAHGEVFLRRTAELVRDAGYRIVNVAVQVMAVRPKLSPRRAEAERILSAAVGA 378          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CORGL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum GN=ispF PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.229e-19
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L+   GY IGN+ A L+ Q PK  P +E  +  +SE++GA
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLSAHGYVIGNVAAQLVGQTPKFGPRREEAQQVISEIIGA 128          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.507e-19
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L++  G+ IGN+ A L+ Q PK  P +E  +  +S+++GA
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQTPKFGPRREEAQQVISDIIGA 128          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PROAC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Propionibacterium acnes GN=ispF PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-18
Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            +  R G G D+H+L  G P+ + G++ P E  G   HSDGDV  H + DA+L A GL DIG IF  +DP+W GA     +   V L+   G+ I N+   ++ QRP+++  +      L++ +GA
Sbjct:    2 IEIRTGIGTDVHQLSAGVPMHVAGLSFPDETVGLVGHSDGDVACHAICDALLSATGLGDIGSIFGTADPQWAGAAGVALLGHVVALVTGEGWTIQNVAVQVVGQRPRMAARRAEAEAALAQTVGA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_KOSOT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=ispF PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.093e-18
Identity = 55/135 (40.74%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAG-YEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +RVG GFD H LE     L +GG+ V  E     HSDGD L+H +VDAILGA    +IG  FP+++   +G  S+ F+ E +R    AG YEI N+D+ +I+ + +++P+ E IR  L+ +LG      N+K K+
Sbjct:    2 YRVGIGFDAHPLEANKKGLYLGGVKVSEEYSSIGHSDGDALIHAIVDAILGATNAGNIGIWFPENEEN-RGRRSTEFL-EIIRKKILAGKYEILNIDSVIIIDKVRMNPHIENIRLKLARILGISKGNINVKPKS 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_COREF (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium efficiens GN=ispF PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.356e-17
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  + E   L+   G+ IGN+ A L+ Q PK  P +E  +  +S++LGA
Sbjct:   19 RVGIASDAHQIEAGKPCWIACLLFDGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLIEVRELLITRGFTIGNVAAQLVGQTPKFGPRREEAQQVISDILGA 139          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H    G P  +  +  P E G   HSDGDV  H   DA+L A  L D+G++F    P++ GA  +V + E  RL+  AG+ IGN+   +I  RP+++  +E  +  +S  LGA
Sbjct:    8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVIGNRPRMAGRREDAQKAMSVALGA 128          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_SALTO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=ispF PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RV  G D+H  E G P  + G++ P + G   HSD DV  H   +A+L A  L D+G  F    P+W GA     + E+ R +  AGY IGN+   +I  RPK+ P +   +  LS  +GA
Sbjct:    6 RVAIGVDMHAFESGRPCWVAGLHWPGQDGLAGHSDADVAAHAACNALLSAAELGDLGANFGVGQPEWSGASGVALLSESARRVRTAGYTIGNVSVQVIGNRPKIGPRRAEAQQVLSAAVGA 126          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_KINRD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=ispF PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.947e-17
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGA 608
            RVG G D+H+L  G P  + G+    E  G E HSDGDV  H   DA+  A GL D+G  F  + P++ GA  +  + EA RL+ EAG+EIGN+   ++  RPK+   +   +  LS   GA
Sbjct:    6 RVGTGVDVHQLVAGRPCWVAGLLWEGEAAGPEGHSDGDVAAHACCDALFAAAGLGDLGAHFGTARPEFAGASGARLLAEAARLVREAGFEIGNVSVQVVGNRPKVGRRRAEAQAALSRACGA 127          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_CORU78.497e-2041.322-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CLAM38.497e-2041.32Bifunctional enzyme ispD/ispF OS=Clavibacter michi... [more]
ISPF_CORGL3.229e-1940.502-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORGB5.507e-1938.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROAC1.602e-1836.802-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_KOSOT2.093e-1840.742-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_COREF1.356e-1738.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRASC2.314e-1738.022-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SALTO3.022e-1737.192-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_KINRD3.947e-1740.162-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
back to top