BQ623101

Overview
NameBQ623101
Unique NameBQ623101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12771 contig Csv1_Contig12771:132..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_LISIN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Listeria innocua GN=ispF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.546e-32
Identity = 63/132 (47.73%), Postives = 94/132 (71.21%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G G+D+H+L+    LIIGGI +P+E+G   HSD DVLLH + DAI+GA+G  DIG  FPD+D  +K A S+  + E  R ++  G+++GNLDAT+I ++PK++PY E ++  ++ELL A+P   N+KA T
Sbjct:    3 RIGQGYDVHKLDYDRELIIGGIKIPYEKGLLGHSDADVLLHAITDAIIGAIGALDIGHFFPDTDMAYKDADSAELLAEIWRQVEAEGFKLGNLDATIIAEKPKMAPYVELMKRRIAELLHAEPSQVNVKATT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BACSU (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus subtilis GN=ispF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.546e-32
Identity = 67/133 (50.38%), Postives = 92/133 (69.17%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FR+G GFD+H+L  G PLIIGGI +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S   ++    ++ + GY +GN+D T+I Q+PK+ PY E +R  ++E L AD    N+KA T
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BACA2 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus amyloliquefaciens (strain FZB42) GN=ispF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.546e-32
Identity = 66/133 (49.62%), Postives = 92/133 (69.17%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FR+G GFD+H+L  G PLIIGGI +P+E+G   HSD DVLLH V DA LGA G  DIG+ FPD+DP++K A S   ++    ++ E GY +GN+D T+I Q+PK++P+ + +R  ++E L AD    N+KA T
Sbjct:    2 FRIGQGFDVHQLTEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAAGEGDIGKHFPDTDPEFKDADSFKLLQHVWNIVKEKGYVLGNIDCTIIAQKPKMAPHIDAMRKRIAEGLEADVSQVNVKATT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_PORGI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis GN=ispF PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.326e-32
Identity = 62/134 (46.27%), Postives = 91/134 (67.91%), Query Frame = 3
Query:  240 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            PFR+G GFD+HRL  GYPL +GG+ + H +G E HSD DVL+H + DA+LGA  L DIG  FP SDP++KG  S + +   + L+   GYE+GN+DAT+  ++PKL+P+   ++  L+E++  +    +LKA T
Sbjct:    4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARVMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATT 137          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 65/132 (49.24%), Postives = 90/132 (68.18%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+GHGFD+H+     P+IIGG+ VP+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R + E GY++GN D T+I Q PK++PY + +R  ++  L  D    N+KA T
Sbjct:    3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKEQGYKLGNADVTIIAQAPKMAPYIDAMREAIAHDLETDIRNINVKATT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_CYAP4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 61/133 (45.86%), Postives = 89/133 (66.92%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            R+G+G+D+HRL    PLI+GG+N+PHE G   HSD DVL H ++DA+LGAL L DIG  FP  DP+W GA S   + +  +L+ E G+++GN+D+ ++ +RPKL P+   +R  LS +L   P    +KA T+
Sbjct:    5 RIGNGYDIHRLVSDRPLILGGVNIPHELGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPGDPQWAGADSLKLLAQVHQLVQERGWQVGNIDSVIVAERPKLKPHLAAMRDRLSAVLKVKPDQIGIKATTN 137          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BURM1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 66/136 (48.53%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKTH 644
            + FR+G G+D+H+L  G PLIIGG+++P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+D  +KGA S V ++E V  +  AG+ I N+D+T+I Q PKL+P+ E +R N++  LG      N+KAKT+
Sbjct:    1 MDFRIGQGYDVHQLVAGRPLIIGGVSIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDAAFKGADSRVLLRECVARVKAAGFAIQNVDSTVIAQAPKLAPHIEAMRANIAADLGLPLERVNVKAKTN 136          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_BACSK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus clausii (strain KSM-K16) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.344e-32
Identity = 62/132 (46.97%), Postives = 92/132 (69.70%), Query Frame = 3
Query:  246 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            R+G GFD+H+L  G PL++GG+++PH +G   HSD DVLLH + DA LGA+G  D+G+ FPD+D  +K A S   + +A +L+  AGY +GN+D T++ Q+PKL+PY E +R  ++ELL  D    ++KA T
Sbjct:    3 RIGQGFDVHQLTEGRPLLLGGVHIPHPKGLLGHSDADVLLHTITDAALGAIGAGDLGKHFPDTDEAFKDADSKHLLSQAWQLVKNAGYTLGNVDCTVMAQKPKLAPYIEAMRKQIAELLETDVANVSVKATT 134          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_SHEHH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella halifaxensis (strain HAW-EB4) GN=ispF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.673e-32
Identity = 67/135 (49.63%), Postives = 93/135 (68.89%), Query Frame = 3
Query:  237 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            +  R+GHGFD+H+     PLI+GG++VP+E G  AHSDGDV LH + DAILGA+ L DIG+ FPD+DP++KGA S V ++   +L  + G+ + NLD T+I Q PK++P+ E IR  L+  L AD    N+KA T
Sbjct:    1 MKIRIGHGFDVHKFGGEPPLILGGVDVPYEVGLIAHSDGDVALHAISDAILGAMALGDIGKHFPDTDPEFKGADSRVLLRHCYQLATDMGFSLSNLDVTIIAQAPKMAPHIEAIRKVLAADLVADINDINVKATT 135          
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Match: ISPF_GEOKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus kaustophilus GN=ispF PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.673e-32
Identity = 66/133 (49.62%), Postives = 90/133 (67.67%), Query Frame = 3
Query:  243 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPPGGNLKAKT 641
            FR+G GFD+H+L  G PLIIGG+ +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S+  +     L  + GY + N D T+I Q+PKL+PY E +R  ++ LL A+    N+KA T
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGVTIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRFKDADSAELLAHVWALARQEGYRLVNADCTIIAQKPKLAPYIEEMRAVIARLLEAERSQVNVKATT 134          
The following BLAST results are available for this feature:
BLAST of BQ623101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_LISIN2.546e-3247.732-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACSU2.546e-3250.382-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACA22.546e-3249.622-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PORGI3.326e-3246.272-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_VIBVY4.344e-3249.242-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CYAP44.344e-3245.862-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURM14.344e-3248.532-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BACSK4.344e-3246.972-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHEHH5.673e-3249.632-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOKA5.673e-3249.622-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00192 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00192 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623101 ID=BQ623101; Name=BQ623101; organism=Citrus sinensis; type=EST; length=646bp
AGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCCTCTCCAC
AGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTTTGAAGCC
TCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACGTCGCTGC
CTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGTTAAAGAG
TCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTTTTCGTGT
GGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCTCTGATCA
TCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCACTCTGAC
GGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAGCATTGGG
TCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAGTGGAAGG
GTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCATGGATGAG
GCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTCAAAGACC
AAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCTGAACTGC
TAGGAGCAGACCCCCCCGGTGGAAATCTGAAAGCGAAAACTCATGA
back to top