BQ623110

Overview
NameBQ623110
Unique NameBQ623110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:740..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.328e-75
Identity = 74/100 (74.00%), Postives = 79/100 (79.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG +EGYR+                 FDPLGLADDPD FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  179 ILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 150.599 bits (379), Expect = 3.328e-75
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWAC     G
Sbjct:  103 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMG 182
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 9.635e-75
Identity = 76/100 (76.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYRI                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 147.902 bits (372), Expect = 9.635e-75
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA      G
Sbjct:   90 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMG 169
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 9.635e-75
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWAC     G
Sbjct:   90 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMG 169

HSP 2 Score: 150.214 bits (378), Expect = 9.635e-75
Identity = 72/100 (72.00%), Postives = 79/100 (79.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG +EGYR+                 FDPLGLADDP+ FA++KVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  166 VLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.638e-74
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWAC     G
Sbjct:  103 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMG 182

HSP 2 Score: 150.599 bits (379), Expect = 1.638e-74
Identity = 72/100 (72.00%), Postives = 79/100 (79.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG +EGYR+                 FDPLGLADDPD FA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  179 ILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.137e-74
Identity = 74/100 (74.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYRI                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  168 VLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 149.443 bits (376), Expect = 2.137e-74
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 171
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.137e-74
Identity = 72/100 (72.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG +EGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWAYATNFVPGK
Sbjct:  168 VLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 149.443 bits (376), Expect = 2.137e-74
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 171
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.137e-74
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  168 VLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 149.443 bits (376), Expect = 2.137e-74
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 171
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.138e-74
Identity = 75/100 (75.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYRI                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  162 VLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

HSP 2 Score: 147.902 bits (372), Expect = 2.138e-74
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA      G
Sbjct:   86 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMG 165
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.787e-74
Identity = 74/100 (74.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  175 ILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

HSP 2 Score: 148.673 bits (374), Expect = 2.787e-74
Identity = 68/79 (86.08%), Postives = 73/79 (92.41%), Query Frame = 1 
Query:    4 FAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            FAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:  100 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMG 178
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.788e-74
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  168 VLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 149.443 bits (376), Expect = 2.788e-74
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 171
The following BLAST results are available for this feature:
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB2A_PINSY3.328e-7574.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_ORYSJ9.635e-7576.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB29_MAIZE9.635e-7587.50Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2A_PYRPY1.638e-7487.50Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2G_SOLLC2.137e-7474.00Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC2.137e-7472.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_PETSP2.137e-7473.00Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_ORYSJ2.138e-7475.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY2.787e-7474.00Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB24_TOBAC2.788e-7473.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00201 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00201 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623110 ID=BQ623110; Name=BQ623110; organism=Citrus sinensis; type=EST; length=623bp
ACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAAT
GCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAG
TGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTCT
GAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAG
CATTTTGGCTATCTGGGCCTGCCACGCCTGTGCTTATGGGTTTTGTTGAA
GGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTA
CCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAAT
TTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTC
TCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAAT
TGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGG
CTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCATGACTTGAT
GGGGGTCTTTTTCAGCTGTAACATTATTCTATGTATCGTATGTGCTTTTG
GGGAAACTCTGTCATGGACTTAT
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