BQ623110

Overview
NameBQ623110
Unique NameBQ623110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:740..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.636e-74
Identity = 72/100 (72.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  166 ILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 149.443 bits (376), Expect = 3.636e-74
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   90 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMG 169
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.741e-74
Identity = 74/100 (74.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  170 ILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269

HSP 2 Score: 147.517 bits (371), Expect = 4.741e-74
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA      G
Sbjct:   94 TFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMG 173
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.742e-74
Identity = 73/100 (73.00%), Postives = 78/100 (78.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYR+                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL DH+ADP  NNAWAYATNF PGK
Sbjct:  166 ILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265

HSP 2 Score: 148.288 bits (373), Expect = 4.742e-74
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCV PE+L+KNGVKFGEAVWFKAG+QIF+EGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   90 TFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMG 169
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.742e-74
Identity = 74/100 (74.00%), Postives = 79/100 (79.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A PV NNAWAYATNFVPGK
Sbjct:  164 ILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263

HSP 2 Score: 149.058 bits (375), Expect = 4.742e-74
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA      G
Sbjct:   88 TFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMG 167
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.184e-74
Identity = 72/100 (72.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  167 VLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 149.443 bits (376), Expect = 6.184e-74
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   91 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 170
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.185e-74
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 149.443 bits (376), Expect = 6.185e-74
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   90 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 169
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.065e-74
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYR+                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  167 VLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 147.902 bits (372), Expect = 8.065e-74
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+ ++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   91 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 170
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.052e-73
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYRI                +FDPLGLADDP+ FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH++DPV NNAW+YATNFVPGK
Sbjct:  169 ILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268

HSP 2 Score: 147.517 bits (371), Expect = 1.052e-73
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TF+KNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA      G
Sbjct:   93 TFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMG 172
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.052e-73
Identity = 72/100 (72.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  168 VLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 148.673 bits (374), Expect = 1.052e-73
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+ ++NG+KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   92 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 171
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.052e-73
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   91 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 170

HSP 2 Score: 149.058 bits (375), Expect = 1.052e-73
Identity = 71/100 (71.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQA+VTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  167 VLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
The following BLAST results are available for this feature:
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB22_TOBAC3.636e-7472.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_PEA4.741e-7474.00Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB23_POLMU4.742e-7473.00Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_SOYBN4.742e-7474.00Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_TOBAC6.184e-7472.00Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2B_SOLLC6.185e-7473.00Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB24_PETSP8.065e-7473.00Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB28_PEA1.052e-7373.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PETSP1.052e-7372.00Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB25_NICPL1.052e-7385.00Chlorophyll a-b binding protein E, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00201 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00201 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623110 ID=BQ623110; Name=BQ623110; organism=Citrus sinensis; type=EST; length=623bp
ACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAAT
GCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAG
TGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTCT
GAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAG
CATTTTGGCTATCTGGGCCTGCCACGCCTGTGCTTATGGGTTTTGTTGAA
GGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTA
CCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAAT
TTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTC
TCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAAT
TGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGG
CTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCATGACTTGAT
GGGGGTCTTTTTCAGCTGTAACATTATTCTATGTATCGTATGTGCTTTTG
GGGAAACTCTGTCATGGACTTAT
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