BQ623110

Overview
NameBQ623110
Unique NameBQ623110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:740..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.372e-73
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMG 171

HSP 2 Score: 148.673 bits (374), Expect = 1.372e-73
Identity = 72/100 (72.00%), Postives = 79/100 (79.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYRI                +FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW +ATNFVPGK
Sbjct:  168 ILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.372e-73
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWAC     G
Sbjct:   90 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMG 169

HSP 2 Score: 148.288 bits (373), Expect = 1.372e-73
Identity = 74/100 (74.00%), Postives = 77/100 (77.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYRI                +FDPLGLADDP+ F ELKVKELK GRLAM SMFGFFVQAIVTGKGP+ENL DHIADPV NNAWAYATNFVPGK
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.789e-73
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYR+                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  168 VLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 146.747 bits (369), Expect = 1.789e-73
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFK G+QIFS+GGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMG 171
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.333e-73
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 171

HSP 2 Score: 147.902 bits (372), Expect = 2.333e-73
Identity = 71/100 (71.00%), Postives = 79/100 (79.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYR+                +FDPLGLA+DP+ FAELKVK +KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  168 VLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.547e-72
Identity = 71/100 (71.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYR+                +FDPLGLA+DP++ AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  165 ILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 146.362 bits (368), Expect = 2.547e-72
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL+IWA      G
Sbjct:   89 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMG 168
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.322e-72
Identity = 72/100 (72.00%), Postives = 79/100 (79.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYR+                +FDPLGLADD + FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  165 VLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264

HSP 2 Score: 145.591 bits (366), Expect = 3.322e-72
Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFK G+QIFSEGGL YLGNP+L+HAQSILAIWAC     G
Sbjct:   89 TFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMG 168
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.327e-72
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCVFPE+LS+NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA      G
Sbjct:   53 TFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMG 132

HSP 2 Score: 144.821 bits (364), Expect = 3.327e-72
Identity = 71/100 (71.00%), Postives = 78/100 (78.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYRI                +FDPLGLA+ P+ FAELKVKELKNGRLAMFSMFGFFV AIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:  129 ILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.650e-72
Identity = 72/100 (72.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYR+                +FDPLGLADDP+ FAEL+VKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  167 VLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 143.28 bits (360), Expect = 5.650e-72
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNR+LEVIH RW MLGALGCVFPE+ ++NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWAC     G
Sbjct:   91 TFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMG 170
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.372e-72
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA      G
Sbjct:   81 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMG 160

HSP 2 Score: 144.436 bits (363), Expect = 7.372e-72
Identity = 71/100 (71.00%), Postives = 76/100 (76.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYRI                +FDPLGLADDP+  AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYAT   PGK
Sbjct:  157 ILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.636e-71
Identity = 72/100 (72.00%), Postives = 79/100 (79.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            +LMG VEGYRI                +FDPL LADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+A+PV NNAWAYATNFVPGK
Sbjct:  146 ILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245

HSP 2 Score: 142.51 bits (358), Expect = 1.636e-71
Identity = 67/80 (83.75%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFGEA WFKAG+QIFSEGGLDYLGN +LIHAQSILAIWA      G
Sbjct:   70 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMG 149
The following BLAST results are available for this feature:
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB2A_SPIOL1.372e-7385.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_MAIZE1.372e-7386.25Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_NICPL1.789e-7373.00Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_TOBAC2.333e-7385.00Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_APIGR2.547e-7271.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU3.322e-7272.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_PEA3.327e-7286.25Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_PETSP5.650e-7272.00Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_SOYBN7.372e-7286.25Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN1.636e-7172.00Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00201 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00201 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623110 ID=BQ623110; Name=BQ623110; organism=Citrus sinensis; type=EST; length=623bp
ACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAAT
GCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAG
TGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTCT
GAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAG
CATTTTGGCTATCTGGGCCTGCCACGCCTGTGCTTATGGGTTTTGTTGAA
GGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTA
CCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAAT
TTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTC
TCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAAT
TGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGG
CTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCATGACTTGAT
GGGGGTCTTTTTCAGCTGTAACATTATTCTATGTATCGTATGTGCTTTTG
GGGAAACTCTGTCATGGACTTAT
back to top