BQ623110

Overview
NameBQ623110
Unique NameBQ623110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:740..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.014e-54
Identity = 67/98 (68.37%), Postives = 73/98 (74.49%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 523
            VLMG VEGYR+                AFDPLGLADDPD FAELKVKE+KNGRLAMF+  GFFVQAIVTGKGPIENL DH+A+P  NNA+AYAT F P
Sbjct:  175 VLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272

HSP 2 Score: 96.2857 bits (238), Expect = 7.014e-54
Identity = 48/82 (58.54%), Postives = 64/82 (78.05%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TF + RELE+IH+R  +LGALG V PE+L+ ++G+KFG+A +WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A      G
Sbjct:   97 TFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMG 178
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.492e-53
Identity = 63/101 (62.38%), Postives = 68/101 (67.33%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 526
            VLMG  E YR                    FDPLGLADDPD FAELKVKE+KNGRLAMFS  GFFVQAIVTGKGP++NL DH+ADP  N A+A AT F PG
Sbjct:  152 VLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252

HSP 2 Score: 107.071 bits (266), Expect = 4.492e-53
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFA+ RE+E+IH+RWA+LGALG + PE+LS+  GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A      G
Sbjct:   75 TFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMG 155
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.498e-42
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYG 240
            TFAKNRELEVIH RWAMLGALGCVFPE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWAC     G
Sbjct:   89 TFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMG 168

HSP 2 Score: 40.817 bits (94), Expect = 8.498e-42
Identity = 20/41 (48.78%), Postives = 23/41 (56.10%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQF 352
            VLMG VEGYR+                AFDPLGLA+DP+ F
Sbjct:  165 VLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.991e-40
Identity = 82/123 (66.67%), Postives = 89/123 (72.36%), Query Frame = 2 
Query:  161 LTILATPTSFMLRAFWLSGPATPVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            L  L  P     ++      A  VLMGFVEGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWA+ATNFVPGK
Sbjct:  143 LDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265

HSP 2 Score: 150.214 bits (378), Expect = 7.877e-36
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYGF 243
            TFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA      GF
Sbjct:   90 TFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGF 170
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.721e-39
Identity = 74/100 (74.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  168 VLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 32.3426 bits (72), Expect = 3.721e-39
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:  181 NLIHAQSILAIWACHACAYG 240
            +L+HAQSILAIWAC     G
Sbjct:  152 SLVHAQSILAIWACQVVLMG 171
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.721e-39
Identity = 74/100 (74.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  168 VLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 32.3426 bits (72), Expect = 3.721e-39
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:  181 NLIHAQSILAIWACHACAYG 240
            +L+HAQSILAIWAC     G
Sbjct:  152 SLVHAQSILAIWACQVVLMG 171
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.462e-39
Identity = 82/110 (74.55%), Postives = 85/110 (77.27%), Query Frame = 2 
Query:  200 AFWLSGPATPVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            A W S     VLMGFVEGYR+                AFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVANNAWAYATNFVPGK
Sbjct:  131 AIWAS---QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237

HSP 2 Score: 149.828 bits (377), Expect = 1.029e-35
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 1 
Query:    1 TFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACHACAYGF 243
            TFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA      GF
Sbjct:   62 TFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGF 142
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.023e-39
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAW+YATNFVPGK
Sbjct:   17 VLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

HSP 2 Score: 32.3426 bits (72), Expect = 5.023e-39
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:  181 NLIHAQSILAIWACHACAYG 240
            +L+HAQSILAIWAC     G
Sbjct:    1 SLVHAQSILAIWACQVVLMG 20
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.318e-39
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 32.3426 bits (72), Expect = 6.318e-39
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:  181 NLIHAQSILAIWACHACAYG 240
            +L+HAQSILAIWAC     G
Sbjct:  150 SLVHAQSILAIWACQVVLMG 169
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.318e-39
Identity = 73/100 (73.00%), Postives = 80/100 (80.00%), Query Frame = 2 
Query:  230 VLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 529
            VLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 32.3426 bits (72), Expect = 6.318e-39
Identity = 13/20 (65.00%), Postives = 15/20 (75.00%), Query Frame = 1 
Query:  181 NLIHAQSILAIWACHACAYG 240
            +L+HAQSILAIWAC     G
Sbjct:  150 SLVHAQSILAIWACQVVLMG 169
The following BLAST results are available for this feature:
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB2_DUNSA7.014e-5468.37Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE4.492e-5362.38Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SILPR8.498e-4286.25Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB26_PETSP8.991e-4066.67Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB2F_SOLLC3.721e-3974.00Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC3.721e-3974.00Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB25_SOLLC4.462e-3974.55Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB2D_SOLLC5.023e-3973.00Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC6.318e-3973.00Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC6.318e-3973.00Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00201 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00201 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623110 ID=BQ623110; Name=BQ623110; organism=Citrus sinensis; type=EST; length=623bp
ACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAAT
GCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAG
TGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTCT
GAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAG
CATTTTGGCTATCTGGGCCTGCCACGCCTGTGCTTATGGGTTTTGTTGAA
GGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTA
CCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAAT
TTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTC
TCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAAT
TGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGG
CTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCATGACTTGAT
GGGGGTCTTTTTCAGCTGTAACATTATTCTATGTATCGTATGTGCTTTTG
GGGAAACTCTGTCATGGACTTAT
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