BQ623110

Overview
NameBQ623110
Unique NameBQ623110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:740..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.220e-13
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 2 
Query:  311 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 493
            AFDPLG + DP +F ELK+KE+KNGRLAM +  GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  171 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.220e-13
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:  311 AFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVANN 493
            AFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+   G GP+ENL  H+ADP  NN
Sbjct:  172 AFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 2 
Query:  314 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 484
            FDPLGLA DP++ A+L++ E+K+ RLAM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:  223 FDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279
[Close]
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:  314 FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 484
            FDPLGLA DP + A+L++ E+K+ RLAM    GF VQA  TGKGP+ N   H++DP+
Sbjct:  220 FDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276
The following BLAST results are available for this feature:
BLAST of BQ623110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
CB121_HORVU3.220e-1359.68Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC3.220e-1359.68Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4A_ARATH1.036e-1154.39Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH3.937e-1154.39Chlorophyll a-b binding protein CP29.2, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00201 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00201 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623110 ID=BQ623110; Name=BQ623110; organism=Citrus sinensis; type=EST; length=623bp
ACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAAT
GCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAG
TGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTCT
GAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAG
CATTTTGGCTATCTGGGCCTGCCACGCCTGTGCTTATGGGTTTTGTTGAA
GGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTA
CCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAAT
TTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTC
TCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAAT
TGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCAACAATGCCTGGG
CTTATGCCACTAACTTTGTTCCCGGAAAGTAAAGAAACTCATGACTTGAT
GGGGGTCTTTTTCAGCTGTAACATTATTCTATGTATCGTATGTGCTTTTG
GGGAAACTCTGTCATGGACTTAT
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