BQ623113

Overview
NameBQ623113
Unique NameBQ623113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623113_ssr13 microsatellite BQ623113_ssr13:13..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:114..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.664e-20
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  259 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 567
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   21 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLG 119
[Close]
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.664e-20
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  259 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 567
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
[Close]
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.664e-20
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  259 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 567
            WYG DR  +L        + P YLTGE PGDYG+D  GLS  P+ F++ +  E+IH RWAMLGA G + PE  +K G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLG 147
[Close]
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.786e-20
Identity = 50/103 (48.54%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:  259 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 567
            WYGPDR  +L        E P YLTGE PGDYG+D   LS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
[Close]
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.786e-20
Identity = 50/103 (48.54%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:  259 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 567
            WYGP+R  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLG 149
[Close]
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.786e-20
Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:  259 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 567
            WYG DR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EA WFK G+ +     L+Y G
Sbjct:   50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLG 148
[Close]
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.786e-20
Identity = 53/104 (50.96%), Postives = 63/104 (60.58%), Query Frame = 1 
Query:  259 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 567
            WYGPDR    P+ L   SE  P YLTGE PGDYG+D   +S  P+ F+K +  E+IH RWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAG 148
[Close]
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.250e-20
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:  259 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 567
            WYG DR ++L  G    S  P YL+GE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   K G   G EAVWFK G+ +     L+Y G
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGSQIFAEGGLDYLG 147
[Close]
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.250e-20
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:  259 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 567
            W+GPD   +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 110
[Close]
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.163e-20
Identity = 51/103 (49.51%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:  259 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 567
            WYG DR  FL        E P YL GE  GDYG+D  GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +     L+Y G
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLG 150
The following BLAST results are available for this feature:
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB25_SOLLC3.664e-2047.57Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC3.664e-2047.57Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC3.664e-2047.57Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB25_PETSP4.786e-2048.54Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_NICPL4.786e-2048.54Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_WHEAT4.786e-2049.51Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH4.786e-2050.96Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_POLMU6.250e-2049.51Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_PEA6.250e-2047.57Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_PHYPA8.163e-2049.51Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00204 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00204 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623113 ID=BQ623113; Name=BQ623113; organism=Citrus sinensis; type=EST; length=630bp
CTAACACAAAGAAGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGC
AGCATCGTCCACTCCTGCTGCCTCCATTGGAGCTAAGGAGATGCTTGGCA
ACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCA
AACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGC
CCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGC
TCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTC
TTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGA
CTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCA
AATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCT
GCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGG
TCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACA
CATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGGTTTTGCTGTC
ATTGCTGAAATTGTTCTTGTAGGTGGTGCT
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