BQ623113

Overview
NameBQ623113
Unique NameBQ623113
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623113_ssr13 microsatellite BQ623113_ssr13:13..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:114..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.742e-14
Identity = 45/121 (37.19%), Postives = 59/121 (48.76%), Query Frame = 1
Query:  268 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLGFAVIAEIVLVGGA 630
            PDR ++ P      S  PE+L G +PGD+G+DP GL   P+        EL+H+RWAMLGAAG  IPE   K G    P   W+  G      +T   F            + E+VL+G A
Sbjct:   63 PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF------------VIELVLIGWA 164          
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:  319 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 528
            P+YLTG + GD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+  G
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WYDAG 131          
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.265e-12
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  319 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 528
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG 130          
The following BLAST results are available for this feature:
BLAST of BQ623113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB12_PETHY8.742e-1437.19Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_ARATH1.262e-1245.71Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA6.265e-1244.29Chlorophyll a-b binding protein P4, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00204 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00204 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623113 ID=BQ623113; Name=BQ623113; organism=Citrus sinensis; type=EST; length=630bp
CTAACACAAAGAAGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGC
AGCATCGTCCACTCCTGCTGCCTCCATTGGAGCTAAGGAGATGCTTGGCA
ACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCA
AACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGC
CCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGC
TCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTC
TTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGA
CTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCA
AATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCT
GCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTGG
TCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAACA
CATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGGTTTTGCTGTC
ATTGCTGAAATTGTTCTTGTAGGTGGTGCT
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