BQ623118

Overview
NameBQ623118
Unique NameBQ623118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2114 contig Csv1_Contig2114:563..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.125e-41
Identity = 81/172 (47.09%), Postives = 113/172 (65.70%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV---SKDEG 521
            I V    G T  G +E  + L+D L +   +TG D  +H+DAASGGF+APF+ P++ WDFRLP VKSI+ SGHK+GL   G GWV+WR++E LP+EL+F+++YLG    TF +NFS+ + QVIAQYY+ +RLG EGY  V    ++ A  L + + K G +  +     DEG
Sbjct:  203 IGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEG 374          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.779e-28
Identity = 66/150 (44.00%), Postives = 88/150 (58.67%), Query Frame = 3
Query:   30 ILGSTLNGEFEDVKLLNDLLTE-KNKETGW---DTPIHVDAASGGFIAPF--------LYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMEN 443
            ILG+T  G  E+V+ + D+L++ + K   W   D PIH D ASGGFI PF         Y    W F  P V S+N SGHK+GL   G+GWV+WR++  L +EL F + YLG  + TF LNFS+   QV+ QY+  + LG  GYR   +N
Sbjct:  238 ILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGASGGFIIPFGFEKEHMKAYGMERWGFNHPRVVSMNTSGHKFGLTTPGLGWVLWRDESLLADELRFKLKYLGGVEETFGLNFSRPGFQVVHQYFNFVSLGHSGYRTQFQN 387          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_METKA (L-tyrosine decarboxylase OS=Methanopyrus kandleri GN=mfnA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.082e-17
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 3
Query:   21 VAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL---YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYL-GADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 491
            +  I+G+T  G  +D++ L+D+  +         P+HVDAA GGF APFL   YP   + F L  V S+ V  HK GLV    G +V+R+ E  P+ +  +  YL G     +T+  ++  + V+A Y  ++ LG EGYR +   C+E  + + E   + G
Sbjct:  147 IVGIVGTTETGSVDDIEALSDVAEDHG------VPLHVDAAFGGFTAPFLREEYPLPRFGFDLEAVVSVTVDPHKMGLVPPPAGGIVFRDDE-FPKAIEVYAPYLSGGGASQYTITGTRPGAPVLALYANILELGEEGYRRIAFRCYEETLKVAEKARELG 300          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_UNCMA (L-tyrosine decarboxylase OS=Uncultured methanogenic archaeon RC-I GN=mfnA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.752e-16
Identity = 56/167 (33.53%), Postives = 85/167 (50.90%), Query Frame = 3
Query:    6 KTPICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIV 506
            K  I + A+ G+T  G+ + ++ +  L  E       D  +HVDAA GGF+ PF+    ++DF +P V+SI +  HK GL     G +++R+ E L + L  +  YL +   T       G+S   A Y  L  LG  GYR ++  C EN  +L+E LE  G   I+
Sbjct:  156 KNTIALVAVAGTTEFGQIDPIEEIGRLAQEH------DLYLHVDAAFGGFVIPFMDRPAKFDFEIPGVQSITIDPHKMGLSTIPSGGLLYRS-ESLMKVLEINAQYLTSMVQTSLAGTRSGASAASA-YAVLQYLGRAGYREIVATCMENTRILREQLEDMGMEPII 314          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_METTP (L-tyrosine decarboxylase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=mfnA PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 46/144 (31.94%), Postives = 74/144 (51.39%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENC 446
            +C+  I G+T  G+ + +  L++L  E         P+HVDAA GGF+ PFL  +  WDFR   V+SI +  HK G+     G +++R+ + L   L     YL   +   +L  ++  +   A Y  ++ LG +GYR V+  C
Sbjct:  160 VCLVGIAGTTEFGQVDPIGDLSELAIENG------IPLHVDAAFGGFVLPFLEKDCMWDFRAEGVQSITIDPHKMGMSPIPAGGLIFRSSDPL-RRLETETYYLTVSRQA-SLTGTRSGAAAAATYAVIMHLGIDGYRKVVRRC 295          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_ARCFU (L-tyrosine decarboxylase OS=Archaeoglobus fulgidus GN=mfnA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 51/159 (32.08%), Postives = 80/159 (50.31%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 491
            + +  I G+T  G+ + +  L+ L  E+  E      +HVDAA GG + PF+     +DF+   V SI +  HK G+     G +++RN+  L   L     YL   +  FTL  ++  + V + Y  L  LGFEG R V++NC +N  +L E +   G
Sbjct:  149 VAIVGIAGTTELGQIDPIVELSKLAEERQVE------LHVDAAFGGLVIPFMDNPYPFDFQNRGVSSITIDPHKMGMATIPAGGIIFRNESYL-RALEVETPYL-TSKTQFTLTGTRPGTGVASAYAVLKSLGFEGMREVVKNCLKNTRILVEEMRDLG 299          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_PYRAB (L-tyrosine decarboxylase OS=Pyrococcus abyssi GN=mfnA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.616e-13
Identity = 49/161 (30.43%), Postives = 80/161 (49.69%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 485
            I +  I G+T  G  +D+  L+DL  E      +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+     G +++R K+ L    +      G      T+  ++  + V+A +  +  LGFEGYR ++    E +    E ++K
Sbjct:  162 IGIVGIAGTTGLGVVDDIPALSDLARE------YGIPLHVDAAFGGFVIPFAKSLGYDLPDFDFKLKGVESITIDPHKMGMAPIPAGGIIFRRKKYLKAISVLAPYLAGGKVWQATITGTRPGASVLAVWALIKHLGFEGYREIVRKAMELSRWFAEEIKK 316          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_PYRKO (L-tyrosine decarboxylase OS=Pyrococcus kodakaraensis GN=mfnA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 50/161 (31.06%), Postives = 80/161 (49.69%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 485
            I +  I G+T  G  +D+  L+DL  +      +  P+HVDAA GGF+ PF     Y   ++DFRL  VKSI +  HK G+V    G +++R K+ L    +      G      T+  ++  +  +A +  +  LGF+GY+ V++   E A      L+K
Sbjct:  160 IGIVGIAGTTGLGVVDDIPALSDLALD------YGLPLHVDAAFGGFVIPFAKALGYEIPDFDFRLKGVKSITIDPHKMGMVPIPAGGIIFREKKFLDSISVLAPYLAGGKIWQATITGTRPGANALAVWAMIKHLGFDGYKEVVKEKMELARWFASELKK 314          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_METS3 (L-tyrosine decarboxylase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=mfnA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 59/172 (34.30%), Postives = 84/172 (48.84%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKDE 518
            + + AI G+T  G  + ++ L+++  E N         HVDAA GGF  PFL    Y    +DF LP V SI V  HK GL     G +++R KE L E +     YL     +  +    G++   A Y  +  LG EGY  +  N  +N    KEGLEK G +++V + E
Sbjct:  163 VAIVAIAGTTELGLVDPIEELSEIAYENN------IYFHVDAAFGGFSIPFLRKIGYEFPPFDFSLPGVCSITVDPHKMGLAPIPAGGILFRKKEYL-EVMAVDSPYLTVKTQSTIVGTRSGAASA-ATYAIMKYLGNEGYEKLAGNLMDNTHYFKEGLEKIG-YDVVVEPE 325          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_PYRHO (L-tyrosine decarboxylase OS=Pyrococcus horikoshii GN=mfnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.142e-13
Identity = 49/161 (30.43%), Postives = 80/161 (49.69%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEK 485
            I +  I G+T  G  +D+  L+DL  +      +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+     G +V+R K+ L    +      G      T+  ++  + VIA +  +  LGFEGY  ++E   + +    E ++K
Sbjct:  161 IGIVGIAGTTGLGVVDDIPALSDLARD------YGIPLHVDAAFGGFVIPFAKELGYELPDFDFKLKGVQSITIDPHKMGMAPIPAGGIVFRRKKYLKAISVLAPYLAGGKVWQATITGTRPGASVIAVWALIKHLGFEGYMRIVERAMKLSRWFAEEIKK 315          
The following BLAST results are available for this feature:
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DCEA_ECO573.125e-4147.09Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCE_YEAST1.779e-2844.00Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
MFNA_METKA1.082e-1733.54L-tyrosine decarboxylase OS=Methanopyrus kandleri ... [more]
MFNA_UNCMA7.752e-1633.53L-tyrosine decarboxylase OS=Uncultured methanogeni... [more]
MFNA_METTP1.462e-1431.94L-tyrosine decarboxylase OS=Methanosaeta thermophi... [more]
MFNA_ARCFU1.909e-1432.08L-tyrosine decarboxylase OS=Archaeoglobus fulgidus... [more]
MFNA_PYRAB1.616e-1330.43L-tyrosine decarboxylase OS=Pyrococcus abyssi GN=m... [more]
MFNA_PYRKO2.111e-1331.06L-tyrosine decarboxylase OS=Pyrococcus kodakaraens... [more]
MFNA_METS32.757e-1334.30L-tyrosine decarboxylase OS=Methanobrevibacter smi... [more]
MFNA_PYRHO6.142e-1330.43L-tyrosine decarboxylase OS=Pyrococcus horikoshii ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00209 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00209 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623118 ID=BQ623118; Name=BQ623118; organism=Citrus sinensis; type=EST; length=580bp
GGATGAAAACACCTATCTGTGTTGCTGCTATTCTGGGTTCTACTCTCAAT
GGAGAATTTGAAGATGTCAAGCTCTTGAACGACCTTTTGACAGAGAAGAA
CAAGGAAACAGGATGGGATACTCCAATTCATGTTGATGCTGCTAGTGGTG
GCTTCATTGCACCATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTTG
CCGCTGGTGAAGAGTATTAATGTTAGTGGCCACAAGTACGGGCTTGTGTA
TGCTGGTATTGGTTGGGTTGTTTGGAGAAACAAAGAAGACTTGCCTGAAG
AACTCATCTTCCACATCAATTACCTAGGAGCTGATCAACCCACCTTCACC
CTCAATTTTTCTAAAGGTTCTAGCCAAGTAATTGCTCAGTACTACCAACT
AATCCGCTTAGGTTTTGAGGGATACCGCAATGTGATGGAGAATTGTCACG
AAAATGCAATGGTGCTGAAAGAAGGACTAGAGAAAACCGGCCGCTTCAAC
ATTGTGTCAAAGGACGAAGGGGGTTCCGTTGGTGGCATTTTCTCTCAAGG
ACAACAAACGCGCACGATGAATTCGAAGTG
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