BQ623118

Overview
NameBQ623118
Unique NameBQ623118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2114 contig Csv1_Contig2114:563..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_PYRFU (L-tyrosine decarboxylase OS=Pyrococcus furiosus GN=mfnA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.022e-13
Identity = 48/162 (29.63%), Postives = 82/162 (50.62%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKT 488
            I +  I G+T  G  +D+  L+DL  +      +  P+HVDAA GGF+ PF     Y   ++DF+L  V+SI +  HK G+     G +V+R+K+ L    +      G      T+  ++  + V+A +  +  LGFEGY  +++   + +    E ++KT
Sbjct:  161 IGIVGIAGTTGLGVVDDIPALSDLARD------YGIPLHVDAAFGGFVIPFAKELGYDLPDFDFKLKGVQSITIDPHKMGMAPIPAGGIVFRHKKYLRAISVLAPYLAGGKIWQATITGTRPGASVLAVWALIKHLGFEGYMEIVDRAMKLSRWFAEEIKKT 316          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_THEGJ (L-tyrosine decarboxylase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=mfnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 46/150 (30.67%), Postives = 75/150 (50.00%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFL----YPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHE 452
            I +  I G+T  G  +D+  L+DL  +      +  P+HVDAA GGF+ PF     Y   ++DFRL  VKSI +  HK G+V    G +++R ++ +    I      G      T+  ++  +  +A +  +  LGFEGY+ ++    E
Sbjct:  160 IGIVGIAGTTGLGVVDDIPALSDLALD------YGLPLHVDAAFGGFVIPFAKALGYDIPDFDFRLKGVKSITIDPHKMGMVPIPAGGIIFRERKYIDAISILAPYLAGGRIWQATITGTRPGANALAVWAMIKHLGFEGYKEIVRKAME 303          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_METLZ (L-tyrosine decarboxylase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=mfnA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 55/162 (33.95%), Postives = 77/162 (47.53%), Query Frame = 3
Query:    6 KTPICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 491
            K  I V+AI G+T  G  +DV+ +  +  E       D   HVDAA GG + PFL     +DF +P V SI++  HK G+     G ++ R  E     L     YL   +   TL  ++  + V   Y  +  LG EG+R V+  C EN   L EG+E  G
Sbjct:  155 KNTISVSAIAGTTEYGMIDDVERIAKIALEN------DLFFHVDAAFGGMVIPFLPNPAPFDFEVPGVSSISLDPHKMGMSTIPCGCLLLREPEQF-GTLNVDTPYLTVKKEC-TLAGTRPGADVAGAYAVIKLLGREGFRAVVAGCMENTRRLIEGMEAFG 308          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_METBU (L-tyrosine decarboxylase OS=Methanococcoides burtonii (strain DSM 6242) GN=mfnA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 48/162 (29.63%), Postives = 81/162 (50.00%), Query Frame = 3
Query:    6 KTPICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 491
            K  I +  I G+T  G+ + +  L+ +  EK         +H+DAA GGF+ PF+  +  +DFRL  V S+ +  HK  L     G ++++  E   E L  H  YL  ++  ++L  ++  + V + Y  +  LG +GY+ V+ +C      L +G EK G
Sbjct:  158 KNTIGLVGIAGTTEFGQLDPINELSKIAIEKG------IFLHIDAAFGGFVIPFMDIDYTYDFRLEGVTSMTIDPHKMALSTIPSGGLLFKEPEYF-ECLEIHTPYLSVNK-QYSLTGTRSGAGVASTYAVMKHLGRKGYKKVVSDCMSVTKKLVDGAEKLG 311          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_METMJ (L-tyrosine decarboxylase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=mfnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 52/173 (30.06%), Postives = 81/173 (46.82%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTF------TLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKD 515
            + +  ++G+T  G  + +  L+++  ++N        +HVDAA GG + PFL   + +DF LP V SI+V  HK G+     G ++ R+ E          + L  D P        TL  ++  + V A    L  LG +G R V+  C EN   L EG+E  G    V+ D
Sbjct:  157 VALVGVVGTTEYGMVDPISRLSEIALDRN------VFLHVDAAFGGMVVPFLDRPVPFDFSLPGVSSISVDPHKMGMSTIPAGCLLTRSAE--------WFSCLNVDTPYLTVKRECTLAGTRPGASVAAAIAVLEYLGMDGMRAVVAGCMENCRRLIEGMETLGYPRAVTPD 315          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_METHJ (L-tyrosine decarboxylase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=mfnA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.513e-11
Identity = 51/170 (30.00%), Postives = 81/170 (47.65%), Query Frame = 3
Query:    6 KTPICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTGRFNIVSKD 515
            K   C+  + G+T  G  + +  L  L  ++         +HVDAA GG++ PFL     +DF +P V SI V  HK GL     G ++ R+ E +   L+    YL   Q  ++L  ++  + V A Y  +  LG +G + ++  C EN   + EG+E  G    V+ D
Sbjct:  154 KNTCCIVGVAGTTEYGMTDPIPALGKLAEQEGVH------LHVDAAFGGYVLPFLDDAPPFDFSVPGVGSIAVDPHKMGLSTIPSGVLMVRD-ERVFCNLLVETPYLTTKQ-AYSLTGTRPGASVAAAYAVMAYLGRKGMKALVTGCMENTRRMIEGMEAFGVHRKVTPD 315          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_METMA (L-tyrosine decarboxylase OS=Methanosarcina mazei GN=mfnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 49/159 (30.82%), Postives = 78/159 (49.06%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 491
            I +  I G+T  G+ + +  L+++  E       +  +HVDAA GGF+ PFL     +DF++P V SI +  HK GL     G +++R+   L + L     YL   +  FTL  ++  +   A    +  LG+EGYR  ++ C E    + E   K G
Sbjct:  175 IGLVGIAGNTEFGQIDPIDKLSEVALEN------ELFLHVDAAFGGFVIPFLEKPQPFDFKVPGVTSIAIDPHKMGLSTIPSGALLFRSPSFL-DSLKVSTPYL-TTKSQFTLTGTRSGASAAATCAVMKYLGYEGYRKNVQYCMELTSKIVEEARKLG 325          
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Match: MFNA_METBF (L-tyrosine decarboxylase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=mfnA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 49/159 (30.82%), Postives = 79/159 (49.69%), Query Frame = 3
Query:   15 ICVAAILGSTLNGEFEDVKLLNDLLTEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCHENAMVLKEGLEKTG 491
            I +  I G+T  G+ + ++ L+ L  E       +  +HVDAA GGF+ PFL     +DF++P V SI +  HK GL     G +++R+   + + L  +  YL   +  FTL  ++  +   A Y  +  LG EGYR  ++ C +    L +   K G
Sbjct:  175 IGLVGIAGNTEFGQVDPIEELSKLALEN------ELFLHVDAAFGGFVIPFLEKPYSFDFKVPGVTSIAIDPHKMGLSTIPSGALLFRSPFFM-DSLKVNTPYL-TTKSQFTLTGTRSGASAAATYAVMKYLGREGYRKNVQYCMQLTTKLVKEARKFG 325          
The following BLAST results are available for this feature:
BLAST of BQ623118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
MFNA_PYRFU8.022e-1329.63L-tyrosine decarboxylase OS=Pyrococcus furiosus GN... [more]
MFNA_THEGJ1.048e-1230.67L-tyrosine decarboxylase OS=Thermococcus gammatole... [more]
MFNA_METLZ1.048e-1233.95L-tyrosine decarboxylase OS=Methanocorpusculum lab... [more]
MFNA_METBU2.334e-1229.63L-tyrosine decarboxylase OS=Methanococcoides burto... [more]
MFNA_METMJ3.981e-1230.06L-tyrosine decarboxylase OS=Methanoculleus marisni... [more]
MFNA_METHJ1.513e-1130.00L-tyrosine decarboxylase OS=Methanospirillum hunga... [more]
MFNA_METMA3.370e-1130.82L-tyrosine decarboxylase OS=Methanosarcina mazei G... [more]
MFNA_METBF9.806e-1130.82L-tyrosine decarboxylase OS=Methanosarcina barkeri... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00209 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00209 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623118 ID=BQ623118; Name=BQ623118; organism=Citrus sinensis; type=EST; length=580bp
GGATGAAAACACCTATCTGTGTTGCTGCTATTCTGGGTTCTACTCTCAAT
GGAGAATTTGAAGATGTCAAGCTCTTGAACGACCTTTTGACAGAGAAGAA
CAAGGAAACAGGATGGGATACTCCAATTCATGTTGATGCTGCTAGTGGTG
GCTTCATTGCACCATTTTTGTACCCAGAGCTTGAATGGGACTTCCGCTTG
CCGCTGGTGAAGAGTATTAATGTTAGTGGCCACAAGTACGGGCTTGTGTA
TGCTGGTATTGGTTGGGTTGTTTGGAGAAACAAAGAAGACTTGCCTGAAG
AACTCATCTTCCACATCAATTACCTAGGAGCTGATCAACCCACCTTCACC
CTCAATTTTTCTAAAGGTTCTAGCCAAGTAATTGCTCAGTACTACCAACT
AATCCGCTTAGGTTTTGAGGGATACCGCAATGTGATGGAGAATTGTCACG
AAAATGCAATGGTGCTGAAAGAAGGACTAGAGAAAACCGGCCGCTTCAAC
ATTGTGTCAAAGGACGAAGGGGGTTCCGTTGGTGGCATTTTCTCTCAAGG
ACAACAAACGCGCACGATGAATTCGAAGTG
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