BQ623120

Overview
NameBQ623120
Unique NameBQ623120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623120_ssr399 microsatellite BQ623120_ssr399:399..410. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:219..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   70 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 345
            A+TCGQV+ ++ PC+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+N   AA +P +CGVSIPY IS +TDCSRV
Sbjct:   30 AVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   58 PVTNAITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 348
            P   AITCGQVT +LAPC+A+LR  G  P   CC GV++L  +ARTT DRQ AC CLK A  +I GIN   AAGLP  CGV+IPYKISP+TDCS+V+
Sbjct:   20 PCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.155e-28
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   70 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 345
            AI+CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   + G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct:   28 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.155e-28
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   70 AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 348
            A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   27 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.155e-28
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   70 AITCGQVTGSLAPCIAFLR-TGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 348
            A+T GQVT SLAPCI +LR +G    PP CC G++SLN AA+TTP RQAAC C+K A   I GIN  +A+GLP +CGV+IPYKISP+TDC+ V+
Sbjct:   23 AVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.544e-27
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 1
Query:   70 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 345
            AI+CGQV+ ++A C+++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A R I G+NA  AA +P +CGVS+PY IS +TDCSRV
Sbjct:   26 AISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.322e-26
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1
Query:   70 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 348
            AI+CG VTG L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   25 AISCGAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.024e-26
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   70 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 348
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   18 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.561e-26
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   70 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 348
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.561e-26
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   70 AITCGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 348
            AI+CG VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  SI  +N N AA LP +CGV+IPYKIS  T+C+ V+
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
The following BLAST results are available for this feature:
BLAST of BQ623120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP2_SORBI7.010e-2860.87Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_TOBAC7.010e-2861.86Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_MAIZE9.155e-2861.96Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP2_GOSHI9.155e-2861.70Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI9.155e-2861.70Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_SORBI4.544e-2760.87Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP5_LENCU1.322e-2660.22Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP4_LENCU5.024e-2660.22Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU6.561e-2660.22Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_LENCU6.561e-2660.22Non-specific lipid-transfer protein 2 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00211 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00211 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623120 ID=BQ623120; Name=BQ623120; organism=Citrus sinensis; type=EST; length=585bp
CTCATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGT
GACTGCCCCAGTGACTAATGCCATAACATGTGGGCAGGTGACAGGCTCCT
TGGCTCCATGCATCGCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCC
CCATGCTGTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCC
TGACCGCCAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATCAATCC
CCGGCATCAACGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTGGAGTC
AGCATTCCTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTCAGGTG
AAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAGAAGAA
TAAATAAATAAAGAATATATATGTTAAATTTCTTTGTCCGAACGAGTCTC
CACTTGTGTGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTTTAAT
ATCATATTAAATATGTAAACGTGATCTGTGTTTTGAGTGATTAATTCTAG
TTATTTTGGGGGATAAAAAAAAAAAAAAAAAACAA
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