BQ623128

Overview
NameBQ623128
Unique NameBQ623128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623128_ssr469 microsatellite BQ623128_ssr469:469..483. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7528 contig Csv1_Contig7528:832..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.392e-18
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 159
            ARS G AVI+N DKAWDDQW++WVGPF+GAA+AA YHQ+ILR  A+KALG
Sbjct:  232 ARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALG 281          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.392e-18
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 159
            ARS GAAVIYN +KAWDDQW+FWVGPF+GA  AA YHQ+ILRA A+KALG
Sbjct:  223 ARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALG 272          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.424e-17
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 150
            ARSLGAAVIYN DKAWDD W+FWVGPFIGAAIAA YHQ++LRA A K
Sbjct:  230 ARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRASAAK 276          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.424e-17
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 150
            ARSLG AVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  234 ARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK 280          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.429e-17
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 159
            ARS GAAVI+NK K WDD W+FWVGPFIGA IAAFYHQF+LRA   K+LG
Sbjct:  228 ARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLG 277          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.143e-17
Identity = 38/50 (76.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 159
            ARS+GAAVIYN+ KAWDD W+FW GPFIGA  AA YHQ+ILRA A+KALG
Sbjct:  225 ARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALG 274          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.230e-17
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKAL 156
            ARS GAAVIYN +KAWDD W+FWVGPF+GA  AA YHQ+ILRA A+KAL
Sbjct:  221 ARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKAL 269          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.230e-17
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 159
            ARS GAAVIYNK + WDD W+FWVGPF+GA  AA YHQ++LRA A+KALG
Sbjct:  225 ARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALG 274          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP26_MAIZE (Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.983e-16
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 144
            ARSLGAAV+YN  KAW DQW+FWVGPFIGAAIAA YHQ +LRA A
Sbjct:  234 ARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 278          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.983e-16
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 144
            ARSLGAAV+YN  KAW DQW+FWVGPFIGAAIAA YHQ +LRA A
Sbjct:  229 ARSLGAAVVYNNSKAWSDQWIFWVGPFIGAAIAALYHQIVLRASA 273          
The following BLAST results are available for this feature:
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PIP27_MAIZE6.392e-1874.00Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP27_ARATH6.392e-1878.00Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP25_MAIZE1.424e-1782.98Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP22_ORYSJ1.424e-1782.98Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP23_ARATH2.429e-1776.00Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP26_ORYSJ4.143e-1776.00Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP28_ARATH9.230e-1775.51Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP1_ATRCA9.230e-1772.00Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_MAIZE5.983e-1680.00Aquaporin PIP2-6 OS=Zea mays GN=PIP2-6 PE=2 SV=1[more]
PIP25_ORYSJ5.983e-1680.00Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00219 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00219 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623128 ID=BQ623128; Name=BQ623128; organism=Citrus sinensis; type=EST; length=513bp
CGGCAGAGAGCAAGGAGTCTCGGGGCCGCTGTTATTTACAACAAGGACAA
GGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTCATCGGTGCAG
CAATTGCGGCTTTCTACCACCAATTCATCTTGAGAGCTGGAGCTGTCAAG
GCTCTTGGTTCATTCAGGAGCCAATCCCGTGTCTGATTTTAGTTTCGACA
AGTGGATTATCCACATCTTCATGGGGTTAATGATTTAAAATTGGAAAGAA
AAAACTGGGAAGGAGTAGAGGTGTGTTAAGTTTCAAAAAGTGAATAATGA
GGGGGGGTGTGATTTGTGCTTTCAAGGAGTTGTAGGCAAAAAGTCTCTTA
GACAATGAGGGGGCTTGCTTTTTTGTAATCCCCTCTGTTGTTTTCAAGCA
CTTTCCTTAGAATTCACTTCTTCAATGTTTCTGTCTCTTTCTACTTTGTA
TTATTTTCTCCGTATGTGATTATTATTATTATTGTTGTGCTTTAAGGAAA
AAAAAAAAATTAT
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