BQ623128

Overview
NameBQ623128
Unique NameBQ623128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623128_ssr469 microsatellite BQ623128_ssr469:469..483. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7528 contig Csv1_Contig7528:832..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.021e-15
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IYNKD AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  238 ARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.021e-15
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IYNKD AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  237 ARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRA 279          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.333e-15
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGA 144
            ARSLG AV+YN +KAW DQW+FWVGPFIGAAIAA YHQ ILRA A
Sbjct:  232 ARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVILRASA 276          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.274e-15
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 150
            ARSLGAAVIYN+ KAW D W+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  235 ARSLGAAVIYNQHKAWHDHWIFWVGPLIGAAIAAAYHQYVLRASAAK 281          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.274e-15
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  238 ARSLGAAIIYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRA 280          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.065e-15
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IYNKD AW+D W+FWVGPF+GAA+AA YHQ I+RA
Sbjct:  240 ARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRA 282          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.639e-15
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IYN+D AW+D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  240 ARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRA 282          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.128e-14
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IYN+D AW D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  243 ARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRA 285          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IYN+  AWDD W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  239 ARSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRA 281          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+I+NKD AWDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  237 ARSLGAAIIFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRA 279          
The following BLAST results are available for this feature:
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PIP15_ARATH1.021e-1579.07Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH1.021e-1579.07Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP24_ORYSJ1.333e-1580.00Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP23_ORYSJ2.274e-1576.60Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP14_ARATH2.274e-1576.74Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP11_ORYSJ5.065e-1576.74Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP12_MAIZE8.639e-1576.74Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE1.128e-1476.74Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_ORYSJ1.925e-1474.42Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP12_ARATH1.925e-1474.42Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00219 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00219 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623128 ID=BQ623128; Name=BQ623128; organism=Citrus sinensis; type=EST; length=513bp
CGGCAGAGAGCAAGGAGTCTCGGGGCCGCTGTTATTTACAACAAGGACAA
GGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTCATCGGTGCAG
CAATTGCGGCTTTCTACCACCAATTCATCTTGAGAGCTGGAGCTGTCAAG
GCTCTTGGTTCATTCAGGAGCCAATCCCGTGTCTGATTTTAGTTTCGACA
AGTGGATTATCCACATCTTCATGGGGTTAATGATTTAAAATTGGAAAGAA
AAAACTGGGAAGGAGTAGAGGTGTGTTAAGTTTCAAAAAGTGAATAATGA
GGGGGGGTGTGATTTGTGCTTTCAAGGAGTTGTAGGCAAAAAGTCTCTTA
GACAATGAGGGGGCTTGCTTTTTTGTAATCCCCTCTGTTGTTTTCAAGCA
CTTTCCTTAGAATTCACTTCTTCAATGTTTCTGTCTCTTTCTACTTTGTA
TTATTTTCTCCGTATGTGATTATTATTATTATTGTTGTGCTTTAAGGAAA
AAAAAAAAATTAT
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