BQ623128

Overview
NameBQ623128
Unique NameBQ623128
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623128_ssr469 microsatellite BQ623128_ssr469:469..483. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7528 contig Csv1_Contig7528:832..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.514e-14
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  237 ARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.514e-14
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IYNKD +WDD W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  237 ARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRA 279          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.248e-13
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAAVIYN+  AW D W+FWVGPFIGAA+AA YHQ I+RA
Sbjct:  238 ARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRA 280          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.128e-13
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IYN + AW+D W+FWVGP IGAA+AA YHQ I+RA
Sbjct:  238 ARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRA 280          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA++YN+  AW+D W+FWVGPFIGAA+AA YH  I+RA
Sbjct:  239 ARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRA 281          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+++NK   W+D W+FWVGPFIGAA+AA YHQ ++RA
Sbjct:  241 ARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRA 283          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKAL 156
            ARSLGAAV+YN+  AW D W+FWVGP IGA +AA YH+ +LR  A KAL
Sbjct:  232 ARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKAL 280          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA++YN+  AW D W+FWVGPFIGAA+AA YH  ++RA
Sbjct:  239 ARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRA 281          
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.437e-11
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   10 ARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRA 138
            ARSLGAA+IY+    W   W+FWVGPF GAA+AA YHQ +LRA
Sbjct:  245 ARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRA 287          
The following BLAST results are available for this feature:
BLAST of BQ623128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PIP11_VICFA2.514e-1474.42Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.514e-1474.42Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP11_MAIZE1.248e-1376.74Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP1_SOLLC2.128e-1372.09Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP15_MAIZE3.630e-1369.77Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP2_PEA6.191e-1367.44Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP27_ORYSJ8.086e-1365.31Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP13_ORYSJ1.379e-1267.44Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP16_MAIZE4.437e-1165.12Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00219 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00219 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623128 ID=BQ623128; Name=BQ623128; organism=Citrus sinensis; type=EST; length=513bp
CGGCAGAGAGCAAGGAGTCTCGGGGCCGCTGTTATTTACAACAAGGACAA
GGCTTGGGATGATCAATGGCTCTTCTGGGTTGGACCCTTCATCGGTGCAG
CAATTGCGGCTTTCTACCACCAATTCATCTTGAGAGCTGGAGCTGTCAAG
GCTCTTGGTTCATTCAGGAGCCAATCCCGTGTCTGATTTTAGTTTCGACA
AGTGGATTATCCACATCTTCATGGGGTTAATGATTTAAAATTGGAAAGAA
AAAACTGGGAAGGAGTAGAGGTGTGTTAAGTTTCAAAAAGTGAATAATGA
GGGGGGGTGTGATTTGTGCTTTCAAGGAGTTGTAGGCAAAAAGTCTCTTA
GACAATGAGGGGGCTTGCTTTTTTGTAATCCCCTCTGTTGTTTTCAAGCA
CTTTCCTTAGAATTCACTTCTTCAATGTTTCTGTCTCTTTCTACTTTGTA
TTATTTTCTCCGTATGTGATTATTATTATTATTGTTGTGCTTTAAGGAAA
AAAAAAAAATTAT
back to top