CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:37..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.311e-43
Identity = 88/103 (85.44%), Postives = 92/103 (89.32%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPTVDVSVVDLT RLEK A+YDEIKAAIK ESE  LKGILGYTEDDVVSTDFVGDSRSSIF AKAGI L+  FVK+VSWYDNEWGYS RV+DLI HMA
Sbjct:  231 GMAFRVPTVDVSVVDLTARLEKAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.638e-42
Identity = 85/106 (80.19%), Postives = 93/106 (87.74%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GM+FRVPTVDVSVVDLTVR+EK ASY+EIK AIKA SEG LKGI+GY E+D+VSTDF GDSRSSIF AKAGI L+  F+KLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  232 GMSFRVPTVDVSVVDLTVRIEKGASYEEIKKAIKAASEGPLKGIMGYVEEDLVSTDFTGDSRSSIFDAKAGIALNDHFIKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.139e-42
Identity = 85/106 (80.19%), Postives = 94/106 (88.68%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GM+FRVPTVDVSVVDLTVR+EK ASY++IK AIKA SEG LKGI+GY E+D+VSTDF+GDSRSSIF AKAGI L+  FVKLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  232 GMSFRVPTVDVSVVDLTVRIEKGASYEDIKKAIKAASEGPLKGIMGYVEEDLVSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.766e-42
Identity = 85/103 (82.52%), Postives = 94/103 (91.26%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPTVDVSVVDLTV+L K+ +YDEIKAAIKA SEGKLKGILGYTED VVSTDF+GD+ SSIF A AGI+LS KFVKLVSWYDNE+GYSTRVVDL+ H+A
Sbjct:  227 GMAFRVPTVDVSVVDLTVKLNKETTYDEIKAAIKAASEGKLKGILGYTEDAVVSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.225e-42
Identity = 85/106 (80.19%), Postives = 93/106 (87.74%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPTVDVSVVDLTVRL K A+Y++IKAAIK ESEG LKGILGY ++D+VSTDF GDSRSSIF AKAGI L+  FVKLVSWYDNEWGYSTRVVDLI HM  T+
Sbjct:  200 GMAFRVPTVDVSVVDLTVRLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHMHSTK 305          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.062e-41
Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVP  DVSVVDLTVRLEK ASY++IKAAIK  SEG LKGILGYTED+VVSTDF+GDS SSIF AKAGI L+  FVKL+SWYDNE+GYSTRVVDL+VH+AK
Sbjct:  228 GMAFRVPNPDVSVVDLTVRLEKSASYEDIKAAIKKASEGSLKGILGYTEDEVVSTDFIGDSHSSIFDAKAGISLNPNFVKLISWYDNEYGYSTRVVDLLVHIAK 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.089e-41
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPTVDVSVVDLTV+L+K+ +YDEIK  IK  SEGKLKG+LGYTED VVS+DF+GDSRSSIF A AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  228 GMAFRVPTVDVSVVDLTVKLQKETTYDEIKKVIKQASEGKLKGVLGYTEDAVVSSDFLGDSRSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.533e-40
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPTVDVSVVDLTV+L K+ +YDEIK  +KA +EGKLKG+LGYTED VVS+DF+GDS SSIF A AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  228 GMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 165.622 bits (418), Expect = 2.002e-40
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPTVDVSVVDLTV+L K+ +YDEIK  +KA +EGKLKG+LGYTED VVS+DF+GDS SSIF A AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  228 GMAFRVPTVDVSVVDLTVKLNKETTYDEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.938e-40
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMA RVPT +VSVVDLTVR+EK ASYDEIK A+K  SEG L GILGYTEDD+VSTD  GD+RSSIF AKAGI L+K FVKLVSWYDNEWGYS RV+DL+V++AK
Sbjct:  229 GMAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGSLNGILGYTEDDIVSTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3PC_PETCR4.311e-4385.44Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE1.638e-4280.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE2.139e-4280.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ASHGO4.766e-4282.52Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3PC_HORVU6.225e-4280.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_RHIMI1.062e-4180.77Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3P2_CANGA3.089e-4179.81Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P3_YEAST1.533e-4077.88Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P2_YEAST2.002e-4077.88Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_COCHE9.938e-4076.92Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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