CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:37..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.298e-39
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPT DVSVVDLTVRL K+ SYD+IKAA+K  SEG L+G LGYTEDDVVS+DF+GD+RSSIF AKAGI LSK FVK+VSWYDNE+GYS RV+DL+ HM K
Sbjct:  226 GMAFRVPTPDVSVVDLTVRLGKECSYDDIKAAMKTASEGPLQGFLGYTEDDVVSSDFIGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLLKHMQK 329          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.695e-39
Identity = 81/104 (77.88%), Postives = 91/104 (87.50%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPT +VSVVDLTVRL K+ SYD+IKAA+KA SEG L+G+LGYTEDDVVS DF GD+RSSIF AKAGI LSK FVK+VSWYDNE+GYS RV+DLI HM K
Sbjct:  226 GMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQK 329          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.891e-39
Identity = 78/104 (75.00%), Postives = 92/104 (88.46%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G+AFRVPTVDVSVVDLTV L+K+ +Y+EIK+ IKA SEGKLKG+LGYTED VVS+DF+GD RSSIF A AGI L+  FVKL+SWYDNE+GYSTRVVDL+ H+AK
Sbjct:  229 GLAFRVPTVDVSVVDLTVNLKKETTYEEIKSVIKAASEGKLKGVLGYTEDAVVSSDFLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.891e-39
Identity = 79/104 (75.96%), Postives = 90/104 (86.54%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMA RVPT +VSVVDLTVR+EK ASYDEIK A+K  SEG L GILGYTEDD+V+TD  GD+RSSIF AKAGI L+K FVKLVSWYDNEWGYS RV+DL+V++AK
Sbjct:  229 GMAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.776e-39
Identity = 80/105 (76.19%), Postives = 91/105 (86.67%), Query Frame = -3
Query:  337 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 651
            GMAFRVPTVDVSVVDLTV L K+ SYDEIKAA+K  SEG +KGILGYTEDDVVS+DF+GD+ SSI  A AGI L+  FVKLVSWYDNE+GYSTRVVDL+ H+AK+
Sbjct:  228 GMAFRVPTVDVSVVDLTVNLAKETSYDEIKAALKKASEGSMKGILGYTEDDVVSSDFLGDAHSSIVDAAAGIQLTPTFVKLVSWYDNEFGYSTRVVDLVEHVAKS 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 8.413e-39
Identity = 77/104 (74.04%), Postives = 93/104 (89.42%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPTVDVSVVDLTV+LEK+A+YD+IK A+KA +EG +KG+LGYTED VVS+DF+GD+ +SIF A AGI LS KFVKL+SWYDNE+GYS RVVDLI ++AK
Sbjct:  228 GMAFRVPTVDVSVVDLTVKLEKEATYDQIKKAVKAAAEGPMKGVLGYTEDAVVSSDFLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVAK 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.874e-38
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GM+FRVPT DVSVVDLT RL   ASYDEIKAAIK+ SE ++KGILGYTE  VVS+DF+GDS SSIF A+AGI L+  FVKLVSWYDNEWGYS+RV+DLI HM K +
Sbjct:  227 GMSFRVPTADVSVVDLTARLVNPASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.874e-38
Identity = 83/104 (79.81%), Postives = 90/104 (86.54%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGK-LKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPT DVSVVDLTVRLEK ASYDEIKA IK  SE + LKGILGYTED VVSTDFVGD+ SSIF AKAGI LS  FVKL+SWYDNE+GYSTRVVDL+ ++A
Sbjct:  230 GMAFRVPTPDVSVVDLTVRLEKPASYDEIKATIKKASESEELKGILGYTEDQVVSTDFVGDAHSSIFDAKAGIQLSPTFVKLISWYDNEFGYSTRVVDLLAYVA 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.448e-38
Identity = 77/104 (74.04%), Postives = 91/104 (87.50%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GM+ RVPT +VSVVDLTVRLEK A+YDEIK A+KA ++G L GILGYTED++VSTD  GD+RSSIF AKAGI L+K FVKLVSWYDNEWGYS RV+DL+V++AK
Sbjct:  229 GMSMRVPTSNVSVVDLTVRLEKGATYDEIKEAVKAAADGPLNGILGYTEDEIVSTDLNGDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.197e-38
Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G+AFRVPT+DVSVVDL  R EK A+YDEIKAA+K  S+G LKGILGYTED VVSTDF+GD+ SSIF A AGI L+K FVKL++WYDNEWGYS RVVDL+V  AK
Sbjct:  229 GLAFRVPTLDVSVVDLVCRTEKSATYDEIKAAVKEASKGPLKGILGYTEDHVVSTDFIGDNHSSIFDATAGIQLNKNFVKLIAWYDNEWGYSGRVVDLLVFAAK 332          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_HOMAM1.298e-3976.92Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_PANVR1.695e-3977.88Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_PICPA2.891e-3975.00Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_CURLU2.891e-3975.96Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_ZYGRO3.776e-3976.19Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P1_YEAST8.413e-3974.04Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_PHYIN1.874e-3873.58Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P3_RHIRA1.874e-3879.81Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P_PHANO2.448e-3874.04Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_LENED3.197e-3874.04Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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