CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:37..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.197e-38
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPT DVSVVDLTVRLEK A+Y+EIKA IK  SE +LKGILGYT D VVSTDFVGD++SSIF A AGI L+ KFVKLVSWYDNE+GYS RV+DL+ + AK
Sbjct:  229 GMAFRVPTPDVSVVDLTVRLEKGATYEEIKAVIKKASENELKGILGYTNDQVVSTDFVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDLLAYAAK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.197e-38
Identity = 80/104 (76.92%), Postives = 91/104 (87.50%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPTVDVSVVDLTV+L K+A+YDEIKA IK  SE +LKGILGYTED VVS+DF+GD+ SSIF A AGI LS KFVKLV+WYDNE+GYSTRVVDL+  +AK
Sbjct:  227 GMAFRVPTVDVSVVDLTVKLAKEATYDEIKAVIKKASENELKGILGYTEDAVVSSDFLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAK 330          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.122e-38
Identity = 79/106 (74.53%), Postives = 88/106 (83.02%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RL+K A YD+IK  +KA SEG LKGILGYTED VVS+DF GDSRSSIF A AGI L+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  228 GMAFRVPTPNVSVVDLTCRLQKPAKYDDIKKVMKAASEGPLKGILGYTEDQVVSSDFNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDLLVHMASKE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.122e-38
Identity = 75/103 (72.82%), Postives = 91/103 (88.35%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPTVDVSVVDLTV+L K+A+YDEIKAA+K  S+GKLK ++GYTED VVS+DF+GD+ S+IF A AGI LS KFVK+V+WYDNE+GYS RVVDL+ H+A
Sbjct:  227 GMAFRVPTVDVSVVDLTVKLAKEATYDEIKAAVKKASQGKLKNVVGYTEDSVVSSDFLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.302e-38
Identity = 77/103 (74.76%), Postives = 87/103 (84.47%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPT DVSVVDLTV+L K  +Y++IKAAIKA SEG +KG+LGYTED VVSTDF GD+ SSIF A AGI LS +FVKLVSWYDNEWGYS RVVDL+ + A
Sbjct:  230 GMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTA 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.215e-37
Identity = 76/104 (73.08%), Postives = 89/104 (85.58%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GM+FR+PT DVSVVDL VRLEK ASYD+IK  IK  SEG+LKGILGYTED+VVSTDF+G + SS+F AKAGI L+ KFVKL+SWYDNE+GYS RV DLI ++AK
Sbjct:  229 GMSFRIPTSDVSVVDLVVRLEKGASYDQIKEVIKKASEGELKGILGYTEDEVVSTDFLGSTESSVFDAKAGIPLNDKFVKLISWYDNEYGYSRRVCDLIAYVAK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.215e-37
Identity = 77/103 (74.76%), Postives = 87/103 (84.47%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPT DVSVVDLTV+L K  +Y++IKAAIKA SEG +KG+LGYTED VVSTDF GD+ SSIF A AGI LS +FVKLVSWYDNEWGYS RVVDL+ + A
Sbjct:  230 GMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKAASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVAYTA 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.215e-37
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GMAFRVPT DVSVVDLTV+L K A+YDEIKAA+K  SEGKLK ++GYTED VVS+DF+GD+ S+IF A AGI LS KFVKLV+WYDNE+GYSTRVVDL+ H+A
Sbjct:  227 GMAFRVPTTDVSVVDLTVKLVKAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GM+ RVPTVDVSVVDLTVRL+K A+Y+EI  AIKA S G+LKGILGYTED VVSTDF+G   SSIF  KAGI+LS  FVKL+SWYDNE+GYSTRVVDL+ H+AK
Sbjct:  229 GMSLRVPTVDVSVVDLTVRLKKSATYEEISEAIKAASNGELKGILGYTEDAVVSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.706e-37
Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G+AFRVPT+DVSVVDL VRLEK+ASYDEI A +K  SEG LKGILG+T++ VVSTDF G + SSIF +KAGI +SK FVKL++WYDNEWGYS RV DL+V+ AK
Sbjct:  229 GLAFRVPTLDVSVVDLVVRLEKEASYDEIVATVKEASEGPLKGILGFTDESVVSTDFTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLVYAAK 332          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P2_RHIRA3.197e-3875.96Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P2_KLULA3.197e-3876.92Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_TRISI7.122e-3874.53Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P1_KLULA7.122e-3872.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P2_SCHPO9.302e-3874.76Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3P_CRYCU1.215e-3773.08Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P1_SCHPO1.215e-3774.76Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P1_KLUMA1.215e-3774.76Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_DEBHA1.587e-3775.00Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_SCHCO2.706e-3771.15Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
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