CB304393

Overview
NameCB304393
Unique NameCB304393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:37..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.754e-36
Identity = 77/106 (72.64%), Postives = 85/106 (80.19%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RLEK A YD+IK  +KA +EG LKGILGYTED VVS DF GDS SS F A AGI L+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  228 GMAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.291e-36
Identity = 75/104 (72.12%), Postives = 89/104 (85.58%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GMAFRVPT +VSVVDLT RLEK ASY+ IKAA+K  SEG+LKGILGYTED++VS+D  G++ SSIF AKAGI L+  FVKLVSWYDNEWGYS RV+DL+ ++AK
Sbjct:  229 GMAFRVPTSNVSVVDLTCRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVAK 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.908e-36
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            G++FRVPT+DVSVVDL VRLEK+A+YDEIKAA+K    G LKGIL YTED +VSTDF G++ SSIF A AGI L+K FVKL++WYDNEWGYS RVVDLI  +A+
Sbjct:  229 GLSFRVPTLDVSVVDLVVRLEKEATYDEIKAAVKEAVAGPLKGILDYTEDALVSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVAQ 332          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.104e-36
Identity = 76/105 (72.38%), Postives = 91/105 (86.67%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEG-KLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GM+ RVPTVDVSVVDLTVR++  ASY++IKA +KA SE  +LKGILGYT++DVVSTDF+GD+ SSIF AKAGI L+  FVKL+SWYDNE+GYS RVVDLIV +AK
Sbjct:  229 GMSLRVPTVDVSVVDLTVRIKNGASYEDIKATMKAASESPELKGILGYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.104e-36
Identity = 76/106 (71.70%), Postives = 85/106 (80.19%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLT RLEK A YD+IK  +KA ++G LKGILGYTED VVS DF GDS SS F A AGI L+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  228 GMAFRVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.104e-36
Identity = 75/103 (72.82%), Postives = 87/103 (84.47%), Query Frame = -3
Query:  343 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 651
            GM+ R+PT DVSVVDLTVRL+K ASY+EI  AIK  SEG LKG+LGYTED VVSTDF+G S SSIF  KAGI+LS  FVKL+SWYDNE+GYST+VVDL+ H+A
Sbjct:  229 GMSLRLPTTDVSVVDLTVRLKKAASYEEIAPAIKKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.666e-36
Identity = 75/104 (72.12%), Postives = 85/104 (81.73%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GM+ RVPT  VSVVDLTVR+EK ASYDEIK  IK  + G LKGIL YTEDDVVSTD  GD+ SSIF AKAGI L+K FVKLVSWYDNEWGYS RV+DL+ +++K
Sbjct:  230 GMSMRVPTATVSVVDLTVRIEKAASYDEIKEVIKKAANGPLKGILAYTEDDVVSTDMNGDNHSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLHYISK 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 8.706e-36
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = -3
Query:  334 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 651
            GMAFRVPT +VSVVDLTVRLEK A YDEIK  +KA ++G +KGILGYTE  VVSTDF GD RSSIF A AGI L+  FVKLV+WYDNE+GYS RV DL+ HMA  +
Sbjct:  228 GMAFRVPTPNVSVVDLTVRLEKPAKYDEIKKVVKAAADGPMKGILGYTEHQVVSTDFNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDLMAHMASKE 333          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.137e-35
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = -3
Query:  340 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESE-GKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 651
            GM+ RVPT +VSVVDLT R EK  +Y++IK  IKA SE G+LKGILGYTEDD+VSTD +GD+ SSIF AKAGI L++ F+KLVSWYDNEWGYS RVVDLI +++K
Sbjct:  230 GMSMRVPTANVSVVDLTCRTEKAVTYEDIKKTIKAASEEGELKGILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISK 334          
BLAST of CB304393 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.485e-35
Identity = 73/102 (71.57%), Postives = 87/102 (85.29%), Query Frame = -3
Query:  346 GMAFRVPTVDVSVVDLTVRLEKDASYDEIKAAIKAESEGKLKGILGYTEDDVVSTDFVGDSRSSIFGAKAGIVLSKKFVKLVSWYDNEWGYSTRVVDLIVHM 651
            GMAFRVPT +VSVVDLTVRL K A+YDEIKA +   S+G +KGIL YTE++VVSTDFVGD+ SS+F AKAGI L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  227 GMAFRVPTPNVSVVDLTVRLGKSATYDEIKAKVLEASQGPMKGILDYTEEEVVSTDFVGDTHSSVFDAKAGIPLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
The following BLAST results are available for this feature:
BLAST of CB304393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 342
Match NameE-valueIdentityDescription
G3P_COTJA1.754e-3672.64Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_PODAN2.291e-3672.12Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_OMPOL3.908e-3670.19Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_YARLI5.104e-3672.38Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_CHICK5.104e-3671.70Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P_CANAL5.104e-3672.82Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_SCLSC6.666e-3672.12Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_DANRE8.706e-3670.75Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_ASPOR1.137e-3569.52Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_GLOMM1.485e-3571.57Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304393 ID=CB304393; Name=CB304393; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGCAGCTGAAGAACAGGTCTT
CGATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATT
GTTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATAC
TACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGA
TAATGTCTTGGAAACAATTTTATTTAAACTCAGACCCTCTACATAGAAAC
ACAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGC
GTGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGT
GGACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATAC
CATGAGACAAGCTTCACAAATTTCTTACTCAAAACAATACCAGCCTTGGC
ACCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACAT
CATCCTCAGTGTATCCCAAGATACCCTTTAGTTTCCCCTCTGACTCCGCC
TTGATGGCAGCTTTGATTTCATCATAAGAAGCGTCCTTCTCCAGCCTCAC
TGTGAGGTCAACCACTGAGACATCAACAGTGGGTACACGGAAAGCCATAC
CAG
back to top