CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.998e-39
Identity = 77/103 (74.76%), Postives = 90/103 (87.38%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            +EIEK+V+EAEKYKAED+E KKKVEAKNALENYAYNMRNTIKD+KI  KL   DK+KIE A+ EAI+WL+ NQLAE DE EDK+KELE +CNPIIA++YQG G
Sbjct:  521 DEIEKLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTIKDDKIPGKLDAGDKEKIETAVNEAIEWLEKNQLAEVDELEDKLKELEGLCNPIIARLYQGRG 623          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_CHLRE (Heat shock 70 kDa protein OS=Chlamydomonas reinhardtii GN=HSP70 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.210e-33
Identity = 76/140 (54.29%), Postives = 99/140 (70.71%), Query Frame = -3
Query:  192 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ---------GGGADAGASMDEDXXXXXXXXXXXPKIEEVD 584
            +EIE+MVQEAEKYKA DDE  KKVEAKN+LENYAYNMRNTI+++K++++L  +DK+ +E A+  A+ WL+ NQ+AE +EFE  +KELE +CNPII ++YQ         GGGA AGA+               PKIEEVD
Sbjct:  519 DEIERMVQEAEKYKA-DDEQLKKVEAKNSLENYAYNMRNTIREDKVASQLSASDKESMEKALTAAMDWLEANQMAEVEEFEHHLKELEGLCNPIITRLYQGGAGAGGMPGGGAGAGAA-------PSGGSGAGPKIEEVD 650          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_BRUMA (Heat shock 70 kDa protein OS=Brugia malayi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.192e-33
Identity = 63/107 (58.88%), Postives = 83/107 (77.57%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            +EIE+MVQEAEKYKA+D+  K ++ AKNALE+YA+NM+ TI+DEK+  K+   DKKKI++  +E ++WLDGNQ AE DEFE + KELE +CNPII K+YQ  G   G
Sbjct:  512 DEIERMVQEAEKYKADDEAQKDRIAAKNALESYAFNMKQTIEDEKLKDKISEEDKKKIQEKCDETVRWLDGNQTAEKDEFEHRQKELESVCNPIITKLYQSAGGMPG 618          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71B_BOVIN (Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.220e-32
Identity = 66/108 (61.11%), Postives = 85/108 (78.70%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG-GGADAG 584
            EEIE+MVQEAEKYKAED+  +++V AKNALE+YA+NM++ ++DE +  K+  ADKKK+ D  +E I WLD N LAE DEFE K KELE +CNPII+++YQG GG  AG
Sbjct:  513 EEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISRLYQGAGGPGAG 620          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.220e-32
Identity = 66/108 (61.11%), Postives = 85/108 (78.70%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG-GGADAG 584
            EEIE+MVQEAEKYKAED+  +++V AKNALE+YA+NM++ ++DE +  K+  ADKKK+ D  +E I WLD N LAE DEFE K KELE +CNPII+++YQG GG  AG
Sbjct:  513 EEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISRLYQGAGGPGAG 620          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71A_BOVIN (Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA1A PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.220e-32
Identity = 66/108 (61.11%), Postives = 85/108 (78.70%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG-GGADAG 584
            EEIE+MVQEAEKYKAED+  +++V AKNALE+YA+NM++ ++DE +  K+  ADKKK+ D  +E I WLD N LAE DEFE K KELE +CNPII+++YQG GG  AG
Sbjct:  513 EEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISRLYQGAGGPGAG 620          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.549e-32
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MVQEAEKYKAED+  +++V AKNALE+YA NM++ ++DE +  K+  ADKKK+ D  +E I WLD N LAE DEFE K KELE +CNPII+ +YQGGG
Sbjct:  510 EEIERMVQEAEKYKAEDEVQRERVSAKNALESYALNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGGG 612          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.635e-32
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG-GGADAG 584
            EEIE+MVQEAEKYKAED+  +++V AKNALE+YA+NM++ ++DE +  K+  ADKKK+ D  +E I WLD N LAE DEFE K KELE +CNPII+ +YQG GG  AG
Sbjct:  513 EEIERMVQEAEKYKAEDEIQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAGGPGAG 620          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_PONAB (Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.054e-32
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MVQEAEKYKAED+  +++V AKNALE+YA+NM++ ++DE +  K+  ADKKK+ D  +E I WLD N LAE DEFE K KELE +CNPII+ +YQG G
Sbjct:  513 EEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAG 615          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_HUMAN (Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN=HSPA1A PE=1 SV=5)

HSP 1 Score: 137.117 bits (344), Expect = 6.054e-32
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MVQEAEKYKAED+  +++V AKNALE+YA+NM++ ++DE +  K+  ADKKK+ D  +E I WLD N LAE DEFE K KELE +CNPII+ +YQG G
Sbjct:  513 EEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAG 615          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
HSP70_DAUCA2.998e-3974.76Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]
HSP70_CHLRE3.210e-3354.29Heat shock 70 kDa protein OS=Chlamydomonas reinhar... [more]
HSP70_BRUMA4.192e-3358.88Heat shock 70 kDa protein OS=Brugia malayi GN=HSP7... [more]
HS71B_BOVIN1.220e-3261.11Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA... [more]
HS71B_BOSMU1.220e-3261.11Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HS71A_BOVIN1.220e-3261.11Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA... [more]
HSP71_CERAE3.549e-3262.14Heat shock 70 kDa protein 1 OS=Cercopithecus aethi... [more]
HS71B_PIG4.635e-3261.11Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]
HSP71_PONAB6.054e-3261.17Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSP... [more]
HSP71_HUMAN6.054e-3261.17Heat shock 70 kDa protein 1A/1B OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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