CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_ASHGO (78 kDa glucose-regulated protein homolog OS=Ashbya gossypii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.730e-16
Identity = 42/114 (36.84%), Postives = 72/114 (63.16%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWL-DGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDED 584
            ++IE+MV EAE Y+ ED+E + KVEA++ LENYA++++N +  + +  KL   DK+ + +A  + ++WL D +  A  +EF +K + L     PI +K+Y  G +DA    D++
Sbjct:  552 DDIERMVAEAENYQKEDEEIRAKVEARHKLENYAHSLKNQVNGD-LGDKLEEDDKETLLEAANDVLEWLEDNSDSATKEEFNEKFESLSQTAYPITSKLYGAGASDATDDEDDE 664          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_KLULA (78 kDa glucose-regulated protein homolog OS=Kluyveromyces lactis GN=GRP78 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.657e-16
Identity = 40/114 (35.09%), Postives = 74/114 (64.91%), Query Frame = -3
Query:  246 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWL-DGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDED 584
            ++I++MV+EAEKY AED + K K EA+N  EN+ + ++N++  E ++  +   DK+ + D + E+++WL D + +AEA++FE+KM   +    PI+AK     G+ +G   +++
Sbjct:  557 DDIDRMVEEAEKYAAEDAKFKAKSEARNTFENFVHYVKNSVNGE-LAEIMDEDDKETVLDNVNESLEWLEDNSDVAEAEDFEEKMASFKESVEPILAKASASQGSTSGEGFEDE 669          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7X_PIG (Heat shock 70 kDa protein (Fragment) OS=Sus scrofa PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.311e-15
Identity = 37/93 (39.78%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  309 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEA-IQWLDGNQLAEADEFEDKMKELECICN 584
            EE+E+MV+EA  +K ED+  + +V AKN+LE Y ++++ ++ +E +  K+P  D+ K++D  +E    WL+ NQLAE +E+E + +ELE I +
Sbjct:  254 EEVERMVREAASHKVEDEAQRDRVAAKNSLEAYVFHVKGSLHEESLRDKIPEEDRCKVQDKCQEVPYLWLEHNQLAEKEEYEHQKRELEQIAS 346          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: GRP78_PIG (78 kDa glucose-regulated protein (Fragment) OS=Sus scrofa GN=HSPA5 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.149e-15
Identity = 37/82 (45.12%), Postives = 61/82 (74.39%), Query Frame = -3
Query:  342 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFE 584
            EEIE+MV +AEK+  ED + K++++ +N LE+YAY ++N I D EK+  KL + DK+ +E A+EE I+WL+ +Q A+ ++F+
Sbjct:  180 EEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYCLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFK 261          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_ONCVO (Heat shock 70 kDa protein (Fragment) OS=Onchocerca volvulus PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = -3
Query:  435 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKL 584
            +EIE+MVQEAEKYKA+D+  K ++ AKNALE+YA+NM+ TI+DEK+  K+
Sbjct:  270 DEIERMVQEAEKYKADDEAQKDRIAAKNALESYAFNMKQTIEDEKLKDKI 319          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_MIMIV (Heat shock 70 kDa protein homolog OS=Acanthamoeba polyphaga mimivirus GN=HSP70 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 29/99 (29.29%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  288 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY 584
            ++IE+M++EA++++  D++ K  V++KN LENY ++++  + D   S  +  + + +IE    E ++++D N   +   ++ + KELE + NPI   +Y
Sbjct:  513 DQIERMIREAKEFEEADNKKKAAVDSKNELENYTHSVKQAVTDPSNSNNIEESSRSQIESKCAEIMKFVDENPNEDQGTYDLRRKELEDLWNPIAVTLY 611          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
GRP78_ASHGO2.730e-1636.8478 kDa glucose-regulated protein homolog OS=Ashbya... [more]
GRP78_KLULA4.657e-1635.0978 kDa glucose-regulated protein homolog OS=Kluyve... [more]
HSP7X_PIG2.311e-1539.78Heat shock 70 kDa protein (Fragment) OS=Sus scrofa... [more]
GRP78_PIG5.149e-1545.1278 kDa glucose-regulated protein (Fragment) OS=Sus... [more]
HSP70_ONCVO4.080e-1262.00Heat shock 70 kDa protein (Fragment) OS=Onchocerca... [more]
HSP70_MIMIV7.694e-1129.29Heat shock 70 kDa protein homolog OS=Acanthamoeba ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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