CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_CANFA (Heat shock 70 kDa protein 1 OS=Canis familiaris GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.907e-32
Identity = 66/108 (61.11%), Postives = 82/108 (75.93%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG-GGADAG 584
            EEIE+MVQEAEKYKAED+  + +V AKNALE+YA+NM++ ++DE +  K+  ADKKK+ D  +E I WLD N LAE DEFE K KELE +CNPII  +YQG GG  AG
Sbjct:  513 EEIERMVQEAEKYKAEDEVQRDRVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIITGLYQGAGGPGAG 620          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.349e-31
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+MVQEAEKYKAED+  +++V AKNALE+YA+NM++ ++DE +  K+  ADKKK+ D  +E I WLD N LAE DEFE K KELE +CNPII+ +YQG G
Sbjct:  513 EEIERMVQEAEKYKAEDEIQRERVGAKNALESYAFNMKSVVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPIISGLYQGAG 615          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 59/109 (54.13%), Postives = 84/109 (77.06%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            ++I++MVQEAE+YK+ED+ ++ +V AKNA+E+Y YN++ T++DEK+  K+   DK KI D  +E I WLD NQ+AE DE+E K KELE +CNPII+K+YQGG    G+S
Sbjct:  516 DDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQGGPGGGGSS 624          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 59/109 (54.13%), Postives = 84/109 (77.06%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            ++I++MVQEAE+YK+ED+ ++ +V AKNA+E+Y YN++ T++DEK+  K+   DK KI D  +E I WLD NQ+AE DE+E K KELE +CNPII+K+YQGG    G+S
Sbjct:  516 DDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISEQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQGGPGGGGSS 624          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS7C1_DICDI (Heat shock cognate 70 kDa protein 1 OS=Dictyostelium discoideum GN=hspB PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 60/110 (54.55%), Postives = 83/110 (75.45%), Query Frame = -3
Query:  255 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASM 584
            EEIEKMV +AEK+K +D++ K +VE+KN LENYA+ ++N+IKDEK++AK+  +DK  IE   E  ++WL+ NQ AE DE+EDKMK LE + NPI++K+YQ GG   G  M
Sbjct:  511 EEIEKMVADAEKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAAKISDSDKSTIESETESVLKWLESNQTAEKDEYEDKMKALEAVVNPIMSKLYQEGGMPQGGGM 620          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_ICTPU (Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 63/111 (56.76%), Postives = 79/111 (71.17%), Query Frame = -3
Query:  252 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMD 584
            E+IE+MVQEAEKYKAEDD  + KV AKN LE+YA+NM++T++DEK+  K+   DK KI D   E I WLD NQ AE DE+E + K+LE +CNPII K+YQ  G   G   D
Sbjct:  513 EDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLKGKISDEDKHKILDKCNEVISWLDKNQTAEKDEYEHQQKDLEKVCNPIITKLYQSDGGMPGGMPD 623          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_DANRE (Heat shock cognate 71 kDa protein OS=Danio rerio GN=hspa8 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKAEDD  + KV AKN LE+YA+NM++T++DEK+  K+   DK+KI D   E I WLD NQ AE +EFE + KELE +CNPII K+YQ  G   G
Sbjct:  513 EDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLKGKISDEDKQKILDKCNEVIGWLDKNQTAEREEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 59/109 (54.13%), Postives = 83/109 (76.15%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            ++I++MVQEAE+YK+ED+ ++ +V AKNA+E+Y YN++ T++DEK+  K+   DK KI D  +E I WLD NQ+AE DE+E K KELE +CNPII+K+YQGG    G S
Sbjct:  516 DDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISDQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQGGPGGGGGS 624          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 5.125e-31
Identity = 59/109 (54.13%), Postives = 83/109 (76.15%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            ++I++MVQEAE+YK+ED+ ++ +V AKNA+E+Y YN++ T++DEK+  K+   DK KI D  +E I WLD NQ+AE DE+E K KELE +CNPII+K+YQGG    G S
Sbjct:  516 DDIDRMVQEAERYKSEDEANRDRVAAKNAVESYTYNIKQTVEDEKLRGKISDQDKNKILDKCQEVINWLDRNQMAEKDEYEHKQKELERVCNPIISKLYQGGPGGGGGS 624          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_ORYLA (Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.693e-31
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = -3
Query:  249 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGASMDE 584
            E+IE+MVQEAEKYKAEDD  + KV AKN LE+YA+NM++T++DEK++ K+   DK+KI D   E I WLD NQ AE DE+  + KELE +CNPII K+YQ  G   G    E
Sbjct:  511 EDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLAGKISDEDKQKILDKCNEVISWLDKNQTAERDEYVHQQKELEKVCNPIITKLYQSAGGMPGGCQRE 622          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
HSP71_CANFA7.907e-3261.11Heat shock 70 kDa protein 1 OS=Canis familiaris GN... [more]
HS71A_PIG1.349e-3161.17Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HSP72_RAT3.924e-3154.13Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_MOUSE3.924e-3154.13Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HS7C1_DICDI3.924e-3154.55Heat shock cognate 70 kDa protein 1 OS=Dictyosteli... [more]
HSP7C_ICTPU5.125e-3156.76Heat shock cognate 71 kDa protein OS=Ictalurus pun... [more]
HSP7C_DANRE5.125e-3158.88Heat shock cognate 71 kDa protein OS=Danio rerio G... [more]
HSP72_CAPHI5.125e-3154.13Heat shock-related 70 kDa protein 2 OS=Capra hircu... [more]
HSP72_BOVIN5.125e-3154.13Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]
HSP7C_ORYLA6.693e-3156.25Heat shock cognate 71 kDa protein OS=Oryzias latip... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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