CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKAED++ + KV +KN+LE+YA+NM+ T++DEK+  K+   DK+KI D   E I WLD NQ AE +EFE + KELE +CNPII K+YQ  G   G
Sbjct:  513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKAED++ + KV +KN+LE+YA+NM+ T++DEK+  K+   DK+KI D   E I WLD NQ AE +EFE + KELE +CNPII K+YQ  G   G
Sbjct:  513 EDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_HYDMA (Heat shock 70 kDa protein OS=Hydra magnipapillata GN=HSP70.1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 59/107 (55.14%), Postives = 79/107 (73.83%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            E+IE+MVQEAEKYKA+D+  + KV+AKN+LE+Y YNM+ T++DEK+  K+   DKK I     E ++W+D NQ AE D++E K KELE +CNPII K+YQ GG   G
Sbjct:  520 EDIERMVQEAEKYKADDELQRDKVQAKNSLESYCYNMKQTVEDEKVKGKISEEDKKTIIKKCNETVEWVDKNQTAEKDQYEHKQKELEKVCNPIITKLYQAGGGMPG 626          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.544e-30
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = -3
Query:  279 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGG 584
            EEIE+MV +AEKYKAED+  ++K+ AKNALE+YA+NM++ + DE +  K+  +DKKKI D   E + WL+ NQLAE DEF+ K KELE +CNPII K+YQGG
Sbjct:  515 EEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSVVSDEGLKGKISESDKKKILDKCNELLSWLEANQLAEKDEFDHKRKELEQMCNPIITKLYQGG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.322e-30
Identity = 60/104 (57.69%), Postives = 81/104 (77.88%), Query Frame = -3
Query:  273 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGA 584
            EEIE+MVQEAE+YKAED+  +++V AKNALE+YA+NM++ ++DE +  K+  ADKKK+ D  +E I WLD N LAE +EF  K +ELE +CNPII+ +YQG GA
Sbjct:  513 EEIERMVQEAERYKAEDEVQRERVAAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDSNTLAEKEEFVHKREELERVCNPIISGLYQGAGA 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.322e-30
Identity = 61/109 (55.96%), Postives = 82/109 (75.23%), Query Frame = -3
Query:  261 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG-GGADAGA 584
            EEIE+MV EAEKYKAED+E   ++ ++NALE+YAYN+RN++ DEK++ K   ADKKK+EDA+   I WLD +Q A  +E+E+  KELE + NPI+ K+Y G GGA  GA
Sbjct:  511 EEIERMVNEAEKYKAEDEEATARITSRNALESYAYNLRNSLTDEKLADKFDAADKKKLEDAVNSTISWLDNSQEASKEEYEEHQKELEAVANPIMQKLYAGAGGAPGGA 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.322e-30
Identity = 61/110 (55.45%), Postives = 85/110 (77.27%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG-GGADAGAS 584
            ++I++MVQEAEKYKAED+ ++ +V AKN+LE+Y YNM+ T++DEK+  K+   DK+K+ D  +E I  LD NQ+AE +E+E K KELE +CNPI+ K+YQG GGA AG S
Sbjct:  516 DDIDRMVQEAEKYKAEDEANRDRVGAKNSLESYTYNMKQTVEDEKLKGKISDQDKQKVLDKCQEVISSLDRNQMAEKEEYEHKQKELEKLCNPIVTKLYQGAGGAGAGGS 625          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.339e-30
Identity = 59/107 (55.14%), Postives = 82/107 (76.64%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            EEIE+MV EAEKY+ ED++ K+ ++AKNALE+Y +NM++T++DEK+  K+  +DK+ I D   + I+WLD NQLA+ +E+E K KELE ICNPII K+YQG G   G
Sbjct:  513 EEIERMVNEAEKYRNEDEKQKETIQAKNALESYCFNMKSTMEDEKLKDKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKLYQGAGGMPG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 130.954 bits (328), Expect = 4.339e-30
Identity = 60/102 (58.82%), Postives = 79/102 (77.45%), Query Frame = -3
Query:  279 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGG 584
            EEIE+MVQEAE+YKAED+  ++K+ AKNALE+YA+NM++ + DE +  K+  +DKKKI D   E + WL+ NQLAE DEF+ K KELE +CNPII K+YQ G
Sbjct:  515 EEIERMVQEAERYKAEDEGQREKIAAKNALESYAFNMKSAVGDEGLKDKISESDKKKILDKCNEVLSWLEANQLAEKDEFDHKRKELENMCNPIITKLYQSG 616          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_BLAEM (Heat shock 70 kDa protein OS=Blastocladiella emersonii GN=HSP70 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.666e-30
Identity = 67/134 (50.00%), Postives = 86/134 (64.18%), Query Frame = -3
Query:  192 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQ-GGGADAG--ASMDEDXXXXXXXXXXXPKIEEVD 584
            EEIE+MV EAEKYK ED+E   +++AKN LE+YAYN+RNT+ D+K++ K+  ADK+ +  AI+E I WLDGNQ    DE+E K KELE + NPI+ K+Y   GGA  G     D             P IEEVD
Sbjct:  516 EEIERMVAEAEKYKKEDEEAASRIQAKNGLESYAYNLRNTLNDDKVAGKMDAADKETLNKAIDETISWLDGNQEGAKDEYEHKQKELEGVANPIMTKLYSAAGGAPGGMPGGFDPSGAPPPAADTTGPTIEEVD 649          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
HSP7C_CRIGR2.544e-3057.01Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]
HSP7C_BOVIN2.544e-3057.01Heat shock cognate 71 kDa protein OS=Bos taurus GN... [more]
HSP70_HYDMA2.544e-3055.14Heat shock 70 kDa protein OS=Hydra magnipapillata ... [more]
HS71L_MACFA2.544e-3058.82Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
HSP71_RAT3.322e-3057.69Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP71_PUCGR3.322e-3055.96Heat shock protein HSS1 OS=Puccinia graminis GN=HS... [more]
HSP70_CHICK3.322e-3055.45Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]
HSP7D_MANSE4.339e-3055.14Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HS71L_MOUSE4.339e-3058.82Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HSP70_BLAEM5.666e-3050.00Heat shock 70 kDa protein OS=Blastocladiella emers... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
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