CB304394

Overview
NameCB304394
Unique NameCB304394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13846 contig Csv1_Contig13846:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 54/109 (49.54%), Postives = 83/109 (76.15%), Query Frame = -3
Query:  261 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKD-EKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGA 584
            EEI++MV+EAE++  ED + K+K++A+NALE Y YNM+N + D +K++ KL   +K+KIE A +EA++WLD NQ +E +E+++K+KE+E +CNPII  +YQ  G   GA
Sbjct:  544 EEIDRMVKEAEEFAEEDKKVKEKIDARNALETYVYNMKNQVSDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQRSGGAPGA 652          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP71_CANAL (Heat shock protein SSA1 OS=Candida albicans GN=SSA1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = -3
Query:  261 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY-QGGGADAGA 584
            EEI+KMV EAEK+K ED++   +V+AKN LE+YAY+++NTI D ++  K+   DK+K+  AI+E I WLD +Q A  +E+EDK KELE + NPII+  Y   GGA  GA
Sbjct:  512 EEIDKMVSEAEKFKEEDEKEAARVQAKNQLESYAYSLKNTINDGEMKDKIGADDKEKLTKAIDETISWLDASQAASTEEYEDKRKELESVANPIISGAYGAAGGAPGGA 620          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_AJECA (Heat shock 70 kDa protein OS=Ajellomyces capsulata GN=HSP70 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.801e-26
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGG-GADAG 584
            EEIE+M+ EAEKYKAED+    ++  KN LE+YAY++RN+++  K+  KL   DK+K++  I++ +QWLD NQ A  +E+E + KELE + NPI+ K Y GG GA  G
Sbjct:  512 EEIERMLAEAEKYKAEDEAEASRIRPKNGLESYAYSLRNSLRHSKVDEKLEAGDKEKLKSEIDKTVQWLDENQTATKEEYESQQKELEAVANPIMMKFYAGGEGAPGG 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_LEIDO (Heat shock 70 kDa protein OS=Leishmania donovani GN=HSP70 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.964e-26
Identity = 55/108 (50.93%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQG-GGADAG 584
            +EIE+MV +A KY+A+D   + +VEAKN LENYAY+M+NT+ D  +S KL  +DK  +   I+  ++WL  NQ A  +E+E K KELE +CNPI+ KMYQ  GGA  G
Sbjct:  515 DEIERMVNDAMKYEADDRAQRDRVEAKNGLENYAYSMKNTLGDSNVSGKLDDSDKATLNKEIDVTLEWLSSNQEATKEEYEHKQKELESVCNPIMTKMYQSMGGAGGG 622          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_PLACB (Heat shock 70 kDa protein OS=Plasmodium cynomolgi (strain Berok) PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.106e-25
Identity = 51/107 (47.66%), Postives = 80/107 (74.77%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            EEI++MV +AEKYKAED+E+KK++EA+N+LENY Y ++++++D+KI  KL  ++ +    +I   ++WL+ NQLA  +E+E K KE E +C PI++K+YQ  G  AG
Sbjct:  526 EEIDRMVNDAEKYKAEDEENKKRIEARNSLENYCYGVKSSLEDQKIKEKLQPSEIETCMKSITTILEWLEKNQLASKEEYESKQKEAESVCAPIMSKIYQDVGGAAG 632          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP72_CANAL (Heat shock protein SSA2 OS=Candida albicans GN=SSA2 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.444e-25
Identity = 53/109 (48.62%), Postives = 77/109 (70.64%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAGAS 584
            EEIEKMV EAEK+K ED++   +V+AKN LE+YAY+++NT+ +E+  +KL  ++ +++  A +E I WLD NQ A  +EF D+ KELE   NPI+ K YQ G   +GA+
Sbjct:  511 EEIEKMVSEAEKFKEEDEKEASRVQAKNQLESYAYSLKNTLGEEQFKSKLDASEIEEVTKAADETIAWLDSNQTATQEEFADQQKELESKANPIMTKAYQAGATPSGAA 619          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_PENCI (Heat shock 70 kDa protein (Fragment) OS=Penicillium citrinum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.444e-25
Identity = 56/103 (54.37%), Postives = 73/103 (70.87%), Query Frame = -3
Query:  276 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGG 584
            EEIE+M+ EAEKYKAED+    +++AKN LE+YAY+++NTI + K+  ++   DKKKIED I E I WLD NQ AE DE+E + KELE I NPI+   Y   G
Sbjct:  381 EEIERMLAEAEKYKAEDEAEASRIQAKNGLESYAYSLKNTITEGKL--QMSDDDKKKIEDKISEIISWLDNNQTAEKDEYESQQKELEAIANPIMQAAYGAAG 481          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_LEIBR (Heat shock 70 kDa protein (Fragment) OS=Leishmania braziliensis GN=HSP70 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.218e-25
Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            +EIE+MV +A KY+  D   +  +EAKN LENYAY+M+NT+ D  +S KL  +D+  +  AI+ A++WL+ NQ A  +E+E + KELE  CNPI+ KMYQ  G  AG
Sbjct:   90 DEIERMVNDASKYEQADKMQRDALEAKNGLENYAYSMKNTVSDTNVSGKLEESDRSALNLAIDTALEWLNSNQEASKEEYEHRQKELESTCNPIMTKMYQSMGGGAG 196          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=hsp70 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.218e-25
Identity = 55/110 (50.00%), Postives = 79/110 (71.82%), Query Frame = -3
Query:  258 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMY-QGGGADAGAS 584
            E+IE+M+ +AEKYKAED+    +++AKN LE+YAY+++NTI + ++  ++   DKKK+ D I+E I WLD NQ AE DE+E + KELE + NPII+  Y   GGA  GA+
Sbjct:  511 EDIERMLADAEKYKAEDEAEAARIQAKNGLESYAYSLKNTISEGQL--QISEDDKKKVSDKIDEVISWLDNNQTAEKDEYESQQKELEGVANPIISAAYAAAGGAPGGAA 618          
BLAST of CB304394 vs. ExPASy Swiss-Prot
Match: HSP70_PLAFA (Heat shock 70 kDa protein OS=Plasmodium falciparum PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 7.168e-25
Identity = 50/107 (46.73%), Postives = 78/107 (72.90%), Query Frame = -3
Query:  264 EEIEKMVQEAEKYKAEDDEHKKKVEAKNALENYAYNMRNTIKDEKISAKLPTADKKKIEDAIEEAIQWLDGNQLAEADEFEDKMKELECICNPIIAKMYQGGGADAG 584
            +EI++MV +AEKYKAED+E++K++EA+N+LENY Y ++++++D+KI  KL  A+ +     I   ++WL+ NQLA  DE+E K KE E +C PI++K+YQ     AG
Sbjct:  526 DEIDRMVNDAEKYKAEDEENRKRIEARNSLENYCYGVKSSLEDQKIKEKLQPAEIETCMKTITTILEWLEKNQLAGKDEYEAKQKEAESVCAPIMSKIYQDAAGAAG 632          
The following BLAST results are available for this feature:
BLAST of CB304394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
BIP2_ARATH2.228e-2649.54Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
HSP71_CANAL2.910e-2652.29Heat shock protein SSA1 OS=Candida albicans GN=SSA... [more]
HSP70_AJECA3.801e-2649.07Heat shock 70 kDa protein OS=Ajellomyces capsulata... [more]
HSP70_LEIDO4.964e-2650.93Heat shock 70 kDa protein OS=Leishmania donovani G... [more]
HSP70_PLACB1.106e-2547.66Heat shock 70 kDa protein OS=Plasmodium cynomolgi ... [more]
HSP72_CANAL1.444e-2548.62Heat shock protein SSA2 OS=Candida albicans GN=SSA... [more]
HSP70_PENCI1.444e-2554.37Heat shock 70 kDa protein (Fragment) OS=Penicilliu... [more]
HSP70_LEIBR3.218e-2548.60Heat shock 70 kDa protein (Fragment) OS=Leishmania... [more]
HSP70_EMENI3.218e-2550.00Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
HSP70_PLAFA7.168e-2546.73Heat shock 70 kDa protein OS=Plasmodium falciparum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIIaR_B11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIIaR_B11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304394 ID=CB304394; Name=CB304394; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTGAAGGAAAAATAAGACA
TTGCTTAAAAACATAATATCTTTATGCATACACCAGGAAACAGTATTTAC
ATGTAACAGAAGCAGGAAAAGGAAGAAAAGATCACACCCCCAACTCAACC
CCTAATCATTAAACAACATTAAGCATAAATCCTCAAATTTAATCCACCTC
CTCAATCTTGGGGCCAGCACCGCTACCAGCACCAGCAGAAGGACCATCCT
CATCCATACTTGCACCAGCATCAGCTCCACCTCCTTGGTACATCTTGGCA
ATAATTGGGTTGCAGATGCACTCCAGCTCTTTCATCTTATCTTCAAACTC
ATCTGCCTCTGCGAGCTGGTTCCCGTCAAGCCATTGGATGGCCTCCTCAA
TGGCATCTTCAATTTTCTTCTTGTCAGCAGTGGGAAGCTTTGCGCTGATC
TTTTCATCCTTGATTGTGTTTCTCATGTTGTAAGCATAATTCTCAAGAGC
ATTCTTGGCCTCCACCTTTTTCTTGTGCTCGTCATCCTCGGCCTTGTATT
TTTCTGCCTCTTGTACCATCTTCTCTATCTCCTCCT
back to top