CB304455

Overview
NameCB304455
Unique NameCB304455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_ANTSP (Tryptophan synthase alpha chain OS=Antithamnion sp. GN=trpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.420e-12
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = -1
Query:  272 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 535
            VSS GVTG R  I   V  L   IK+ + K + +GFGIS PEH++++  W  DGV+VGSA VK L  A   ++ +  +    KSLK A
Sbjct:  174 VSSTGVTGVRDDIDIKVMELSNYIKKVSNKFIMLGFGISTPEHIKKIMKWNIDGVVVGSAFVKKL-SALKIDDRISSISSLCKSLKKA 260          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_BACHD (Tryptophan synthase alpha chain OS=Bacillus halodurans GN=trpA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.466e-12
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  272 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSP-------EEGLKELEKFAKSLKSA 535
            VSS+GVTG R  +   V   L+ +K   + PV VGFGIS+ E V+ +A   ADGV+VGSA+VKL+GE +         E+GL ++++F   L S+
Sbjct:  172 VSSLGVTGLRDELDPRVHEFLQTVKTHASVPVVVGFGISRREQVEALAE-NADGVVVGSAIVKLVGELEDELNDPEKLEDGLFKIKRFVSELISS 265          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_LACCA (Tryptophan synthase alpha chain OS=Lactobacillus casei GN=trpA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VSS+G+TG R      ++ L+ EIK+ T  P A+GFGI  PE  Q +AG  ADGVI+GSA+V L+  A+  ++    +EKF K ++ A+
Sbjct:  172 VSSMGITGERDEFFAGLKALVAEIKQYTNVPTAIGFGIHTPEQAQTMAGI-ADGVIIGSAIVDLV--AKEKQQAPAAIEKFTKQIRVAV 257          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_CYAME (Tryptophan synthase alpha chain OS=Cyanidioschyzon merolae GN=trpA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.950e-12
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  272 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 535
            +S  GVTG        +  L+ E+K+ T  P+A+GFGISK E V+ V  WGADGVI+GSA +++L      E+G+ +L ++   +K +
Sbjct:  158 ISRTGVTGLETEFDKQIPKLIGELKKVTKAPIALGFGISKSEQVKLVKSWGADGVIIGSACMQIL-----LEKGVDQLSEWISVMKKS 240          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA2_CYACA (Tryptophan synthase alpha chain OS=Cyanidium caldarium GN=trpA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 9.950e-12
Identity = 33/88 (37.50%), Postives = 56/88 (63.64%), Query Frame = -1
Query:  272 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSA 535
            VS  GVTG  A     +  ++ E+K+ TT P+A+GFGI + + +Q V  WGADGVI+G+A +++L      E+G+ +L ++  ++K +
Sbjct:  157 VSRTGVTGVDAHFDNQIPNMIAELKQVTTTPIALGFGIHQKQQLQLVKSWGADGVIIGTACMQIL-----LEKGVDQLTEWISAMKKS 239          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_THEPX (Tryptophan synthase alpha chain OS=Thermoanaerobacter sp. (strain X514) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  269 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLKSAL 535
            VS  GVTGAR  I   ++  ++ + + T  P A+GFGIS PE  +++  + +DG+IVGSA+V+ + +  +  E L+E++ F  SLK  L
Sbjct:  175 VSITGVTGAREDIETDIEEYMKTVSQYTNMPKAIGFGISTPEMAKKLKDF-SDGIIVGSALVERIAKGYNKSEMLQEVKSFVSSLKEVL 262          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_SOLUE (Tryptophan synthase alpha chain OS=Solibacter usitatus (strain Ellin6076) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  278 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSLK 535
            VS  GVTG R S+S  V  L++ ++ +T  P+AVGFGISKPEHV ++ G   + V+VGSA V+L+ +         +LE F + LK
Sbjct:  176 VSRTGVTGERESLSASVAPLIQAVRAATDLPLAVGFGISKPEHVAEL-GSQVEAVVVGSAFVRLIEQNAESAALEIQLESFTRELK 260          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_METKA (Tryptophan synthase alpha chain OS=Methanopyrus kandleri GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = -1
Query:  281 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 535
            +S  GVTGAR  +S     L+R +++    PVAVGFGIS+  HV++V   GADG IVGSA +K +  ++   E  + + + AK L
Sbjct:  176 ISRYGVTGARRDLSEDTLELVRWVRDHVDVPVAVGFGISERWHVEEVIAAGADGAIVGSAFIKEIHRSEDIAEAEERVRELAKEL 260          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_METB6 (Tryptophan synthase alpha chain OS=Methanoregula boonei (strain 6A8) GN=trpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.697e-11
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = -1
Query:  272 VSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGE-AQSPEEGLKELEKFAKSLKSA 535
            VS +GVTGAR +++     LL  ++  T  P+A+GFGIS PEHV      GADGVIVGSA+V ++ +   +P+   ++L ++   +K A
Sbjct:  174 VSVLGVTGARKTVAPEALALLNRVRSHTDLPLAIGFGISTPEHVTTCNLAGADGVIVGSAIVDIVEKNLGNPDAMEQDLRRYVSVMKKA 262          
BLAST of CB304455 vs. ExPASy Swiss-Prot
Match: TRPA_STRAW (Tryptophan synthase alpha chain OS=Streptomyces avermitilis GN=trpA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.895e-11
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = -1
Query:  281 SSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAKSL 532
            S +GVTG RAS+    Q L+R  + +T  PV VG G+S      +VAG+ ADGVIVGSA VKL+ +A+    GL+ +   A  L
Sbjct:  187 SLMGVTGTRASVGEQAQDLVRRTRATTDLPVCVGLGVSNATQAAEVAGF-ADGVIVGSAFVKLMLDAEDEAAGLEAVRALAGEL 269          
The following BLAST results are available for this feature:
BLAST of CB304455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
TRPA_ANTSP3.420e-1244.32Tryptophan synthase alpha chain OS=Antithamnion sp... [more]
TRPA_BACHD4.466e-1243.16Tryptophan synthase alpha chain OS=Bacillus halodu... [more]
TRPA_LACCA7.618e-1243.82Tryptophan synthase alpha chain OS=Lactobacillus c... [more]
TRPA_CYAME9.950e-1239.77Tryptophan synthase alpha chain OS=Cyanidioschyzon... [more]
TRPA2_CYACA9.950e-1237.50Tryptophan synthase alpha chain OS=Cyanidium calda... [more]
TRPA_THEPX1.697e-1139.33Tryptophan synthase alpha chain OS=Thermoanaerobac... [more]
TRPA_SOLUE1.697e-1144.19Tryptophan synthase alpha chain OS=Solibacter usit... [more]
TRPA_METKA1.697e-1142.35Tryptophan synthase alpha chain OS=Methanopyrus ka... [more]
TRPA_METB61.697e-1141.57Tryptophan synthase alpha chain OS=Methanoregula b... [more]
TRPA_STRAW2.895e-1145.24Tryptophan synthase alpha chain OS=Streptomyces av... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0001_IIaR_B01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0001_IIaR_B01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304455 ID=CB304455; Name=CB304455; organism=Citrus sinensis; type=EST; length=535bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCACCAAGTTTTGCCATTAT
TTGAATATAGAATCCATCTTGCAAGGACTTGCAGAGTAAGCATTACACAA
TCTCCAAATCAGGATTTGGAGAATAGATTCTCTAATTTTATACTACATAT
TCAACTTTAGCATCAGGAAATACAGTTCTTTTTAAAATTTGATTCTCTAA
ATAGAAAATTGTTTTTAGAAGTACACTTGATCAAACATTATTGCTGATCT
ACATTACTGTTCTCACGGGAGAGCAGATTTTAACGATTTTGCGAATTTTT
CTAGCTCCTTCAGTCCCTCCTCAGGAGATTGTGCTTCACCCAATAGCTTC
ACCATAGCACTCCCAACAATCACACCATCAGCTCCCCATCCTGCTACTTG
TTGCACATGCTCAGGTTTTGATATGCCAAAGCCAACTGCAACGGGCTTAG
TTGTTGACTCTTTAATTTCCCTTAAAAGAGTTTGAACATGGCCACTAATA
GAAGCGCGAGCTCCAGTAACTCCAATTGAGCTTAC
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